View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_17 (Length: 408)
Name: NF18737_high_17
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 2601487 - 2601114
Alignment:
| Q |
10 |
acatcatcaccaaatttttcactaaaatttctcttgttacacgtcaagttgacaaatatatctgctcacccggtacatatgatgattagttactatccac |
109 |
Q |
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| T |
2601487 |
acatcctcaccaaatttttcactaaaatttctcttgttaaacatcaagctgtcaaatatatctgctcacccggtacaaatgatgattagttactatccac |
2601388 |
T |
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| Q |
110 |
taaaacaaagctcattaatcagtgttagtgatatcagaaaaaatgattcgaacaaaatatgtctgtctttaatttctatatcttctcagtctttttctat |
209 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||| ||| |||||||||||||||||||| |||||||| |||| |
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| T |
2601387 |
taaaacaaagctcattaatcagtgttattgatatcagagaaaatgttgcgaacaaaatatgcctgcctttaatttctatatcttcttagtcttttgctat |
2601288 |
T |
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| Q |
210 |
ttatgtatatatatagttactttttaattataatttctatcattagaaggtatgtttag--tatatttttcaggtgtaattgttgatatataatatgtac |
307 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2601287 |
atatg----tatatagttactttttaattcaaatttctatcattagaaggtatatttagtatatatttttcaggtgtaattgttgatatataatatgtac |
2601192 |
T |
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| Q |
308 |
atgtgttcctgtcatatacaaaatatcccaggttcaatccctgctactaacagttctccctcccccttacaagctaat |
385 |
Q |
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|| ||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2601191 |
atatgttcctgttatatgtaaaatatccaaggttcaatccctgctaccaacagttctccctcccccttacaagctaat |
2601114 |
T |
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