View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_2 (Length: 954)
Name: NF18737_high_2
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 556 - 937
Target Start/End: Complemental strand, 27298956 - 27298571
Alignment:
| Q |
556 |
acataatctactaaaaaa-tgtgtgagttgagcttaaagggtttcacatatatgtttctcattgcaattcttatttggtcttcaaattttgaagagtgca |
654 |
Q |
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| T |
27298956 |
acataatctactaaaaaaatgtgtgagttgagcttaaagggtttcacatatatgtttctcattgcaattcttatttggtcttcaaattttgaagagtgca |
27298857 |
T |
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| Q |
655 |
ttgcaagaagaggaaagcattggaggcaaaatagagaagagatagcttctttgttgaagaagaaaggaaagaatcatggcaatggacatagccataatgg |
754 |
Q |
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| T |
27298856 |
ttgcaagaagaggaaagcattggaggcaaaatagagaagagatagcttctttgttgaagaagaaaggaaagaatcatggcaatggacatagccataatgg |
27298757 |
T |
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| Q |
755 |
tggaggatcaaaatcaaagt---ctccaccacaaaaaagcattccttcactctcaccaccactacctcctccacaagaagaagttacaccttctactcct |
851 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27298756 |
tggaggatcaaaatcaaagtctcctccaccacaaaaaagcattccttcactctcaccaccactacctcctccacaagaagaagttacaccttctactcct |
27298657 |
T |
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| Q |
852 |
ccacctcaaacttacattggtgggtcatctaccacttttaatgtgctagattttggagctaaaggagatggaagaagtgatgatac |
937 |
Q |
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| T |
27298656 |
ccaccacaaacttacattggtgggtcctctaccacctttaatgtgctagattttggagctaaaggagatggaagaagtgatgatac |
27298571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 47 - 294
Target Start/End: Complemental strand, 27299465 - 27299218
Alignment:
| Q |
47 |
aattagcttctaaataagtgagctgaggaatcaaatctgaattctcccaaattaaaaatatattttgatgccaattgatggtgtacaccacattttgaaa |
146 |
Q |
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| T |
27299465 |
aattaccttctaaataagtgagctgaggaatcaaatccgaattctcccaaattaaaaatatattttgatgccaattgatggtgtacaccacattttgaaa |
27299366 |
T |
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| Q |
147 |
ccataaggaagttggaaaagacggcaggtagatttttgagtatagtaaaaatataatatagtagcccccaactgtctcttagtttggtcacatgtaatga |
246 |
Q |
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| T |
27299365 |
ccataaggaagttggaaaagacagcagatagatttttgagtatagtaaaaatataatatagtagcccccaactgtctcttagtttggtcacatgtaatga |
27299266 |
T |
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| Q |
247 |
ctttggatatgtggcaacaagagaatagcaaccccacttttggacact |
294 |
Q |
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| T |
27299265 |
ctttggatatgtggcaacaagagaatagcagccccacttttggacact |
27299218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 348 - 517
Target Start/End: Complemental strand, 27299164 - 27298995
Alignment:
| Q |
348 |
gatgagaggatgaaagagaatgaaatcatcaatgcttggcattatcaagaatattttagtgtttttacatacacaattattattattagtcttcaaacaa |
447 |
Q |
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| T |
27299164 |
gatgagaggatgaaagagaatgaaatcatcaatgcttggcattatcaagaatattttagtgtttttacatacacacttattattattagtcttcaaacaa |
27299065 |
T |
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| Q |
448 |
aaaaccaagttttatccttatataaacacataaccgtcacttggttttttagcaacacaacacaaacaac |
517 |
Q |
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| T |
27299064 |
aaaaccaagttttatccttatataaacacataaccgtcacttggttttttagcaacacaacacaaacaac |
27298995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 689
Target Start/End: Original strand, 14734929 - 14735021
Alignment:
| Q |
597 |
ttcacatatatgtttctcattgcaattcttatttggtcttcaaattttgaagagtgcattgcaagaagaggaaagcattggaggcaaaataga |
689 |
Q |
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| T |
14734929 |
ttcacatacatgttactcattgcatttctcatctggtcttccaattttgagtgctgcattgcaagaagaggtaagcatttgagacaaagtaga |
14735021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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