View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_24 (Length: 339)
Name: NF18737_high_24
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 2666288 - 2665950
Alignment:
| Q |
1 |
agtccatatttgaagcaaaccaaagactctctttcaaataatattcccaaattagtnnnnnnnacttttctttttaaacataatagtcaaaggaaaattt |
100 |
Q |
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| T |
2666288 |
agtccatatttgaagcaaaccaaagactctctttcaaataatattcccaaattagtcccccccacttttctttttaaacataatagtcaaaggaaaattt |
2666189 |
T |
|
| Q |
101 |
acattccatatgcagaaaaagaggaaaacaaagaaagaaacaa----gtgtagaacatgggatactaacttgagactttcaacattctattattatttac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2666188 |
acattccatatgcagaaaaagaggaaaacaaagaaagaaagaaagaagtgtagaacatgggatactaacttgagactttcaacattctattattatttac |
2666089 |
T |
|
| Q |
197 |
acaaaccaatccatgattgcgnnnnnnncttcatcaggcacacaatcacactcacatatcacattaaaatattgtcttaatattttgttatgcatgtata |
296 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2666088 |
acaaaccaatccatgattgcgtttttttcttcatcaggcacacaatcaccctcacatatcatattaaaatattgtcttaatattttgttatgcatgtata |
2665989 |
T |
|
| Q |
297 |
cggacatggacatcggacacaacacagatactgacatgt |
335 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||| |
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| T |
2665988 |
cggatatggacatcggacacaacacagatagtgacatgt |
2665950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 18190208 - 18190164
Alignment:
| Q |
288 |
gcatgtatacggacatggacatcggacacaacacagatactgaca |
332 |
Q |
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||||| ||||||||||||||| ||||||| |||| |||||||||| |
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| T |
18190208 |
gcatggatacggacatggacaccggacacgacacggatactgaca |
18190164 |
T |
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