View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_28 (Length: 299)
Name: NF18737_high_28
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 3346137 - 3346418
Alignment:
| Q |
1 |
ctaaacaaattatcttttgcggaaatccgattcaaaagcaagcgccaaacaaaaatgttaactttgagcggcacagctttaagccacaacacatgattat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
3346137 |
ctaaacaaattatcttttgcggaaatccgattcaaaagcaagcgccaaacaaaaatgttaactttgagcggcacaactttaagccacaacgcatgattat |
3346236 |
T |
|
| Q |
101 |
actccacgttaaaaacaacatcagcagctgttaagttggtataagcattttttaccatgtatcgctgggaaggatgaagtttccaaacccaccggttaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |
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| T |
3346237 |
actccacgttaaaaacaacatcagcagctgttaagttggtataagcattttttaccatgtatcgttgggaaggatgaagtttccaaacccaccgatcaac |
3346336 |
T |
|
| Q |
201 |
cacctcaacctgcaaaacaacgatagataatcgattcaagagaggaatcatcaagtcacggatcctttcaaaaacaaagtag |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346337 |
cacctcaacctgcaaaacaacgatagataatcgattcaagagaggaatcatcaagtcacggatcctttcaaaaacaaagtag |
3346418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 3329197 - 3329431
Alignment:
| Q |
2 |
taaacaaattatcttttgcggaaatccgattcaaaagcaagcgccaaacaaaaatgttaactttgagcggcacagctttaagccacaacacatgattata |
101 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
3329197 |
taaacaaattatcctttgtggaaatccgattcaaaagc--gcaccaaacaaaaatgttaactttgagcggcaccgctttaagccaccacacatgattata |
3329294 |
T |
|
| Q |
102 |
ctccacgttaaaaacaacatcagcagctgttaagttggtataagcattttttaccatgtatcgctgggaaggatgaagtttccaaacccaccggttaacc |
201 |
Q |
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|||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| | || |
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| T |
3329295 |
ctccacattagaaacaacatcagtagttgttaagttggtataagcattttttaccatgtatcgttgggaaggatgaagtttacaaaccgaccggtcatcc |
3329394 |
T |
|
| Q |
202 |
acctcaacctgcaaaacaacgatagataatcgattca |
238 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
3329395 |
acctcaacctgcaaaacaacgttagataatcgattca |
3329431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 3330293 - 3330338
Alignment:
| Q |
236 |
tcaagagaggaatcatcaagtcacggatcctttcaaaaacaaagtag |
282 |
Q |
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||||||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
3330293 |
tcaagagaggaatcatcaactcacagatcctttc-aaaacaaagtag |
3330338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 18024854 - 18024915
Alignment:
| Q |
38 |
gcaagcgccaaacaaaaatgttaactttgagcggcacagctttaagccacaacacatgatta |
99 |
Q |
| |
|
|||| ||||| | |||||| || |||||||||||||| |||||||||||||||||||||||| |
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| T |
18024854 |
gcaaacgccagataaaaatattgactttgagcggcaccgctttaagccacaacacatgatta |
18024915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 8289701 - 8289624
Alignment:
| Q |
22 |
gaaatccgattcaaaagcaagcgccaaacaaaaatgttaactttgagcggcacagctttaagccacaacacatgatta |
99 |
Q |
| |
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||||||||||||| || ||| ||| ||||||||||||| | ||| ||| |||| ||||||||||||| ||||||||| |
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| T |
8289701 |
gaaatccgattcagaaacaaccgcgaaacaaaaatgttgattttaagctgcaccactttaagccacaaaacatgatta |
8289624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13997195 - 13997095
Alignment:
| Q |
1 |
ctaaacaaattatcttttgcggaaatccgattcaaaagcaagcgccaaacaaaaatgttaactttgagcggcacagctttaagccacaacacatgattat |
100 |
Q |
| |
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|||||||| ||||| |||| ||||| ||||||| || || |||| ||||||||||| ||||| ||||| | | ||||||||| ||||||||||||| |
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| T |
13997195 |
ctaaacaagttatcctttgttgaaattcgattcagaaaaaaatgccagacaaaaatgtttactttaagcggaattgatttaagccataacacatgattat |
13997096 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
13997095 |
a |
13997095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 11966656 - 11966707
Alignment:
| Q |
49 |
acaaaaatgttaactttgagcggcacagctttaagccacaacacatgattata |
101 |
Q |
| |
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||||||||| ||||||||||||| || |||| ||||||||||||||||||||| |
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| T |
11966656 |
acaaaaatgataactttgagcggaaccgctt-aagccacaacacatgattata |
11966707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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