View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18737_high_34 (Length: 250)
Name: NF18737_high_34
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_34 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 3345916 - 3346153
Alignment:
| Q |
13 |
aatattgaaagctaggtgagagtttttggaaataccccctagacgaccaaactgaaaaagatgatctagaaagttaccgtgatgaagtgttgataagcct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
3345916 |
aatattgaaagctaggtgagagtttttggaaatatcccctagaccaccaaactgaaaaagatgatctaaaaagttaccgtgatcaagtgttgataagcct |
3346015 |
T |
|
| Q |
113 |
taccagccatatgactccaaaaccgctgtaaaagtcgcatggaaaaaataagcagtcttgatcttccaaacaactacagtcagataaacaatgaatatca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3346016 |
taccagccatatgactccaaaaccgctgtaaaagtcgcattgaaaaaataagcagtcttgatcttccaaacaactacagtcagataaacaatgaatatca |
3346115 |
T |
|
| Q |
213 |
gtatcaaccaagatatgctgcctaaacaaattatcttt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3346116 |
gtatcaaccaagatatgctgcctaaacaaattatcttt |
3346153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 3328660 - 3328811
Alignment:
| Q |
13 |
aatattgaaagctaggtgagagtttttggaaata-ccccctagacgaccaaactgaaaaagatgatctagaaagttaccgtgatgaagtgttgataagcc |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||| | |||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
3328660 |
aatattgaaagctacgtgagagtttttggaaaaaaccccctagcccaccaaattgaaaaagatgatctagaaagttaccgtgatgaactattgataagcc |
3328759 |
T |
|
| Q |
112 |
ttaccagccatatgactccaaaaccgctgtaaaagtcgcatggaaaaaataa |
163 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
3328760 |
ttaccagccatatgactccaaagccgctgtaaaagttgcatttaaaaaataa |
3328811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 3329136 - 3329209
Alignment:
| Q |
174 |
tcttccaaacaactacagtcagataaacaatgaatatcagtatcaaccaagatatgctgcctaaacaaattatc |
247 |
Q |
| |
|
||||| ||| |||||||| ||||| |||||||||||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
3329136 |
tcttctaaaaaactacagccagatgaacaatgaatatgagtatcaaccaagatatgtcgcttaaacaaattatc |
3329209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 16100779 - 16100675
Alignment:
| Q |
65 |
tgaaaaagatgatctagaaagttaccgtgatgaagtgttgataagccttaccagcc----atatgactccaaaaccgc-tgtaaaagtcgcatggaaaaa |
159 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||| |||||||| ||||| | ||||||||||||| |||| | ||||||| ||| |||||| |
|
|
| T |
16100779 |
tgaagaagatgatctagaaagttaccataatgaagtgtttataagcctaaccagacataaatatgactccaaacccgcacgaaaaagtcacattgaaaaa |
16100680 |
T |
|
| Q |
160 |
ataag |
164 |
Q |
| |
|
||||| |
|
|
| T |
16100679 |
ataag |
16100675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 13997231 - 13997182
Alignment:
| Q |
198 |
aaacaatgaatatcagtatcaaccaagatatgctgcctaaacaaattatc |
247 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||||||||| ||||| |
|
|
| T |
13997231 |
aaacaatgaatatcagtattaaccaaaatatgtcgcctaaacaagttatc |
13997182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University