View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18737_high_35 (Length: 249)
Name: NF18737_high_35
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 6789663 - 6789437
Alignment:
| Q |
11 |
tctgtcttaatggtactatagttctccgaactattaaggcagcgtgattcgtagttttgaactctatctcaacattacacgctcaatcttcagggtgtag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6789663 |
tctgtcttaatggtactatagttctccgaactattaaggcagcgtgactcgtagttttgaactctatctcaacattacacgctcaatcttcagagtgtag |
6789564 |
T |
|
| Q |
111 |
ttcaatagctctgtgcattacggtcaaacacattattctaatgtagtaaccttctagaaaatttgtcaaactttcataggaagcggccaaacctccacat |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6789563 |
ttcaatagctctgtgcattacggtcaagcacattattctaatgtagtaaccttctagaaaatttgtcaaactttcataagaagcggccaaacctccacat |
6789464 |
T |
|
| Q |
211 |
tcacaaagatgagtctattaagagtat |
237 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
6789463 |
tcacaaaggtgagtctattaagagtat |
6789437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 6786407 - 6786181
Alignment:
| Q |
11 |
tctgtcttaatggtactatagttctccgaactattaaggcagcgtgattcgtagttttgaactctatctcaacattacacgctcaatcttcagggtgtag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6786407 |
tctgtcttaatggtactatagttctccgaactattaaggcagcgtgactcgtacttttgaactctatctcaacattacacgctcaatcttcagggtgtag |
6786308 |
T |
|
| Q |
111 |
ttcaatagctctgtgcattacggtcaaacacattattctaatgtagtaaccttctagaaaatttgtcaaactttcataggaagcggccaaacctccacat |
210 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6786307 |
ttcaatagctttgtgcattacggtcaagcacattattctaatgtaataacgctctaaaaaatttgtcaaacttttataggaagcggccaaacctccacat |
6786208 |
T |
|
| Q |
211 |
tcacaaagatgagtctattaagagtat |
237 |
Q |
| |
|
| ||| || |||||||||||||||||| |
|
|
| T |
6786207 |
ttacagaggtgagtctattaagagtat |
6786181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 19075078 - 19075124
Alignment:
| Q |
191 |
aagcggccaaacctccacattcacaaagatgagtctattaagagtat |
237 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
19075078 |
aagcggccaaacctccacattcacataggtgagtctatcaagagtat |
19075124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 19122968 - 19123014
Alignment:
| Q |
191 |
aagcggccaaacctccacattcacaaagatgagtctattaagagtat |
237 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
19122968 |
aagcggccaaacctccacattcacataggtgagtctatcaagagtat |
19123014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 48515432 - 48515620
Alignment:
| Q |
54 |
gtgattcgtagttttgaactctatctca----acattacacgctcaatctt-cagggtgtagttcaatagctctgtgcattacggtcaaacacattattc |
148 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||| | ||||||||||| || |||| |||| | |
|
|
| T |
48515432 |
gtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaagtgtagttcaatagccc-gtgcattacggccatacacgttatcc |
48515530 |
T |
|
| Q |
149 |
taatgtagtaacc-ttctagaaaatttgtcaaactttcataggaagcggccaaacctccacattcacaaagatgagtctattaagagtat |
237 |
Q |
| |
|
| |||||||| | |||||||||||||| |||| |||| ||||||||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
48515531 |
cagtgtagtaaacgttctagaaaatttgccaaaatttcttaggaagcggccaaacctccacattcacatagttgagtctatcaagagtat |
48515620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 12701458 - 12701411
Alignment:
| Q |
190 |
gaagcggccaaacctccacattcacaaagatgagtctattaagagtat |
237 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
12701458 |
gaagcggcaaaacctccacattcacataggtgagtctatcaagagtat |
12701411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 16453001 - 16452950
Alignment:
| Q |
185 |
cataggaagcggccaaacctccacattcacaaagatgagtctattaagagta |
236 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
16453001 |
cataggaagcggccccacttccacattcacaaaggtgagtctatcaagagta |
16452950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 21785396 - 21785322
Alignment:
| Q |
163 |
tctagaaaatttgtcaaactttcataggaagcggccaaacctccacattcacaaagatgagtctattaagagtat |
237 |
Q |
| |
|
|||| ||| |||| |||| ||||||| |||| |||||||||||| ||||||| || ||||||||| |||||||| |
|
|
| T |
21785396 |
tctaaaaactttgccaaaatttcatacaaagccgccaaacctccatattcacataggtgagtctatcaagagtat |
21785322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University