View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_36 (Length: 247)
Name: NF18737_high_36
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_36 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 26070532 - 26070746
Alignment:
| Q |
18 |
cattactcccaccagcttgtgtatgcttcttagctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26070532 |
cattactcccaccagcttgtgtatgcttcttagctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttc |
26070631 |
T |
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| Q |
118 |
atatcatgtatacacaacattcatcctaaacagttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagtttttcccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26070632 |
atatcatgtatacacaacattcatcctaaacagttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagtctttcccc |
26070731 |
T |
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| Q |
218 |
cacaagttctctgat |
232 |
Q |
| |
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||||||||||||||| |
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| T |
26070732 |
cacaagttctctgat |
26070746 |
T |
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Target: scaffold0008 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 270089 - 270278
Alignment:
| Q |
50 |
gctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaaca |
149 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270089 |
gctttgcctttccctttatctgaatcagtctacaaaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaaca |
270188 |
T |
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| Q |
150 |
gttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagtttttcccccacaagttctctgatgatgtcc |
239 |
Q |
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| T |
270189 |
gttcacaagattcaatcataccttgttagctccctcaggaagcttcctatctgcaccagtctttcccccacaagttctctgattatgtcc |
270278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 181715 - 181533
Alignment:
| Q |
50 |
gctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaaca |
149 |
Q |
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|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| | |
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| T |
181715 |
gctttgcctttccctttatctgcaccagtctacataaaacatacacaacattcattcaaacttatttcacatcatgtatacacaacattcatcataaata |
181616 |
T |
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| Q |
150 |
gttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagtttttcccccacaagttctctgat |
232 |
Q |
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| T |
181615 |
gttcacaagattcaatcataccttgttacctcccttaggaagcttcctatctgcaccagtctttcccccacaagttctctgat |
181533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 20893442 - 20893623
Alignment:
| Q |
51 |
ctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaacag |
150 |
Q |
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||||| ||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||| || |||| ||||||| |
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| T |
20893442 |
ctttgtctttccctttatctgcaccagtctacagaaaacatacgcaacattaattcaaactcatttcacattatgtatacacaagatgcatcataaacag |
20893541 |
T |
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| Q |
151 |
ttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagtttttcccccacaagttctctgat |
232 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||||| |
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| T |
20893542 |
ttcacaagattcaatcataccttgttacctcccttaggaagctttctatctgcaccaatctttcccccacaagttctctgat |
20893623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 26360242 - 26360061
Alignment:
| Q |
51 |
ctttgcctttccctttatctgaatcagtctacagaaaacatacacaacattcattcaaactcatttcatatcatgtatacacaacattcatcctaaacag |
150 |
Q |
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|||| |||||||||||||||| | ||||||||||||||||||||||||| | ||||||| | |||||| ||||||||||||||| || |||| ||||||| |
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| T |
26360242 |
ctttccctttccctttatctgcaccagtctacagaaaacatacacaacactaattcaaatttatttcacatcatgtatacacaagatgcatcataaacag |
26360143 |
T |
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| Q |
151 |
ttcacaagattcaatcataccttgttagctcccttaggaagcttcctatctgcaccagtttttcccccacaagttctctgat |
232 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |
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| T |
26360142 |
ttcacaagattcaatcataccttgttacctcccttaggaagattcctatctacaccagtctttcccccacaagttctctgat |
26360061 |
T |
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