View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_37 (Length: 245)
Name: NF18737_high_37
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2747711 - 2747937
Alignment:
| Q |
1 |
aacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtatccttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
2747711 |
aacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagaatgctgatgaacatgagtcaccgtatccgtcca |
2747810 |
T |
|
| Q |
101 |
ttcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacagaaaatatcaagatattacaccataaccgatcaaatttgtttaccat |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747811 |
ttcgggtgctgcattagaccgg--tatggataatataaagtttaatgaagacagaaaatatcaagatattacaccataaccgatcaaatttgtttaccat |
2747908 |
T |
|
| Q |
201 |
gttgtgattcatggttttcatctgcaaca |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2747909 |
gttgtgattcatggttttcatctgcaaca |
2747937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2755755 - 2755945
Alignment:
| Q |
1 |
aacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtatccttcca |
100 |
Q |
| |
|
||||||||| ||| |||||||| ||| ||| ||||||||||||||||||| ||| ||| |||||||| || |||||||||||||||||||||||| ||| |
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| T |
2755755 |
aacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtatccgtccg |
2755854 |
T |
|
| Q |
101 |
ttcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacag-aaaatatcaagatattacaccataaccgatcaaatttgtt |
194 |
Q |
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|||||| ||||||||||||| | |||| || ||||||||| |||||| |||| ||||||| ||| ||||||||||||| ||||||||||||| |
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| T |
2755855 |
ttcgggggctgcattagaccag--tatgcatgttataaagttcaatgaaaacagaaaaatattaag--attacaccataactgatcaaatttgtt |
2755945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 2373005 - 2373123
Alignment:
| Q |
1 |
aacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtatccttcca |
100 |
Q |
| |
|
||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||| ||| |
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| T |
2373005 |
aacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcaccgtatccatccg |
2373104 |
T |
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| Q |
101 |
ttcgggtgctgcattagac |
119 |
Q |
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|||||| |||||||||||| |
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| T |
2373105 |
ttcgggggctgcattagac |
2373123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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