View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_high_38 (Length: 240)

Name: NF18737_high_38
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_high_38
NF18737_high_38
[»] chr1 (5 HSPs)
chr1 (12-220)||(45806806-45807014)
chr1 (87-142)||(39742566-39742621)
chr1 (85-138)||(25954082-25954135)
chr1 (88-132)||(6092619-6092663)
chr1 (87-143)||(41625527-41625583)
[»] chr2 (2 HSPs)
chr2 (91-142)||(19513993-19514044)
chr2 (99-131)||(32987724-32987756)
[»] chr8 (3 HSPs)
chr8 (87-152)||(37439752-37439817)
chr8 (88-151)||(7664002-7664065)
chr8 (87-152)||(37439619-37439684)
[»] chr6 (2 HSPs)
chr6 (96-137)||(34382901-34382942)
chr6 (88-128)||(23776740-23776780)
[»] chr5 (2 HSPs)
chr5 (107-143)||(8223112-8223148)
chr5 (87-135)||(8624797-8624845)
[»] chr3 (3 HSPs)
chr3 (112-146)||(4224858-4224892)
chr3 (90-143)||(42984315-42984368)
chr3 (107-155)||(3613928-3613976)
[»] scaffold0533 (1 HSPs)
scaffold0533 (90-135)||(10578-10623)
[»] chr4 (1 HSPs)
chr4 (87-143)||(36291813-36291867)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 45806806 - 45807014
Alignment:
Q  12 cgaagaatatacacaattcttacatnnnnnnngttatgtaactcggttcaaaatacactattagaagagattattgatcaataaatcatatcatgtttta 111  Q
    |||| |||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  45806806 cgaaaaatatacacaattcttgcataaaaaaagttatgtaactcggttcaaaatacactattagaagagatcattgatcaataaatcacatcatgtttta 45806905  T
Q  112 tttaatttaatgatgagatttattgatctaatagttgaaacaattttatacataacgtaacacttatcttatttgtgtaccataaatttggcttcaactc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||    
T  45806906 tttaatttaatgatgagatttattgatctaatagttgaaacaatcttatacataacgtaagacttatcttatttgcttaccataaatttagcttcaactc 45807005  T
Q  212 aaagttata 220  Q
    |||| ||||    
T  45807006 aaagctata 45807014  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 39742621 - 39742566
Alignment:
Q  87 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaa 142  Q
    ||||||||| |||| |||| ||| ||||||||||||| || |||||||||||||||    
T  39742621 gatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatctaa 39742566  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 25954135 - 25954082
Alignment:
Q  85 ttgatcaataaatcatatcatgttttatttaatttaatgatgagatttattgat 138  Q
    |||||||| |||| ||||||| |||  ||||||||| |||||||||||||||||    
T  25954135 ttgatcaaaaaattatatcatatttcttttaatttattgatgagatttattgat 25954082  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 6092619 - 6092663
Alignment:
Q  88 atcaataaatcatatcatgttttatttaatttaatgatgagattt 132  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||    
T  6092619 atcaatagatcatatcatttcctatttaatttaatgatgagattt 6092663  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 41625583 - 41625527
Alignment:
Q  87 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaat 143  Q
    ||||||| ||||  ||||| ||||||||||||||||  ||| |||||||||||||||    
T  41625583 gatcaatgaatctcatcatattttatttaatttaatagtgaaatttattgatctaat 41625527  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 19514044 - 19513993
Alignment:
Q  91 aataaatcatatcatgttttatttaatttaatgatgagatttattgatctaa 142  Q
    ||||| |||||| || ||| ||||||||||||||||||||||||||||||||    
T  19514044 aataagtcatattatatttcatttaatttaatgatgagatttattgatctaa 19513993  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 32987756 - 32987724
Alignment:
Q  99 atatcatgttttatttaatttaatgatgagatt 131  Q
    ||||||| |||||||||||||||||||||||||    
T  32987756 atatcatattttatttaatttaatgatgagatt 32987724  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 37439752 - 37439817
Alignment:
Q  87 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaatagttgaaac 152  Q
    ||||||||||||||||||| |||| || |||||||| || | |||||||||| ||||||| |||||    
T  37439752 gatcaataaatcatatcatattttgttcaatttaattataaaatttattgatttaatagtagaaac 37439817  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 7664002 - 7664065
Alignment:
Q  88 atcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaatagttgaaa 151  Q
    |||||||||| | ||||| ||| |||||||||||||  ||||||| |||||||||| |||||||    
T  7664002 atcaataaattacatcatatttcatttaatttaatggggagattttttgatctaatggttgaaa 7664065  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 37439619 - 37439684
Alignment:
Q  87 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaatagttgaaac 152  Q
    |||||||||||||||| || |||| || |||||||| || | |||||||||| ||||||| |||||    
T  37439619 gatcaataaatcatattatattttgttcaatttaattataaaatttattgatttaatagtagaaac 37439684  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 34382942 - 34382901
Alignment:
Q  96 atcatatcatgttttatttaatttaatgatgagatttattga 137  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  34382942 atcaaatcatgtttcatttaatttaatgatgagatttattga 34382901  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 23776780 - 23776740
Alignment:
Q  88 atcaataaatcatatcatgttttatttaatttaatgatgag 128  Q
    |||||||||||||||||| ||| |||||||||| |||||||    
T  23776780 atcaataaatcatatcatatttaatttaatttattgatgag 23776740  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 8223148 - 8223112
Alignment:
Q  107 ttttatttaatttaatgatgagatttattgatctaat 143  Q
    ||||||||||||||||||| |||||||||||||||||    
T  8223148 ttttatttaatttaatgataagatttattgatctaat 8223112  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 8624797 - 8624845
Alignment:
Q  87 gatcaataaatcatatcatgttttatttaatttaatgatgagatttatt 135  Q
    ||||| ||||||||||||| |||| |||||||||||| |||||||||||    
T  8624797 gatcagtaaatcatatcatattttctttaatttaatggtgagatttatt 8624845  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 4224892 - 4224858
Alignment:
Q  112 tttaatttaatgatgagatttattgatctaatagt 146  Q
    |||||||||||||||||||||||||||| ||||||    
T  4224892 tttaatttaatgatgagatttattgatccaatagt 4224858  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 42984315 - 42984368
Alignment:
Q  90 caataaatcatatcatgttttatttaatttaatgatgagatttattgatctaat 143  Q
    |||| ||||| ||||| | ||||||||||||||||| | |||||||||||||||    
T  42984315 caatgaatcacatcatatattatttaatttaatgataaaatttattgatctaat 42984368  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 3613928 - 3613976
Alignment:
Q  107 ttttatttaatttaatgatgagatttattgatctaatagttgaaacaat 155  Q
    ||||||||||||||| | ||||||||||||||| ||||||  |||||||    
T  3613928 ttttatttaatttaacggtgagatttattgatccaatagtataaacaat 3613976  T

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Target: scaffold0533 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 10623 - 10578
Alignment:
Q  90 caataaatcatatcatgttttatttaatttaatgatgagatttatt 135  Q
    |||||||| | ||||||||||||||||||||||| ||| |||||||    
T  10623 caataaattacatcatgttttatttaatttaatggtgaaatttatt 10578  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 36291867 - 36291813
Alignment:
Q  87 gatcaataaatcatatcatgttttatttaatttaatgatgagatttattgatctaat 143  Q
    ||||||||||||| ||||| | | |||||||||||||||||||  ||||||||||||    
T  36291867 gatcaataaatcacatcatatatcatttaatttaatgatgaga--tattgatctaat 36291813  T

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