View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_high_5 (Length: 666)

Name: NF18737_high_5
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_high_5
NF18737_high_5
[»] chr4 (19 HSPs)
chr4 (10-651)||(31159340-31159992)
chr4 (259-640)||(31488973-31489371)
chr4 (10-230)||(31019891-31020112)
chr4 (10-230)||(31029772-31029993)
chr4 (10-230)||(31489435-31489655)
chr4 (324-640)||(31030127-31030460)
chr4 (324-640)||(31020246-31020579)
chr4 (388-557)||(31162097-31162264)
chr4 (388-643)||(31528977-31529243)
chr4 (404-557)||(31496422-31496575)
chr4 (388-556)||(31150820-31150988)
chr4 (70-144)||(31034133-31034207)
chr4 (8-171)||(31150437-31150600)
chr4 (70-169)||(31528560-31528659)
chr4 (281-323)||(31163374-31163416)
chr4 (389-450)||(31476589-31476650)
chr4 (389-557)||(31501592-31501760)
chr4 (384-417)||(31034801-31034834)
chr4 (584-629)||(31482235-31482280)
[»] chr2 (1 HSPs)
chr2 (14-174)||(17438641-17438801)
[»] chr6 (15 HSPs)
chr6 (583-641)||(12781400-12781458)
chr6 (442-557)||(33288074-33288189)
chr6 (583-641)||(12785590-12785648)
chr6 (490-567)||(12786226-12786303)
chr6 (401-454)||(13608643-13608696)
chr6 (605-641)||(33288248-33288284)
chr6 (382-569)||(33642071-33642258)
chr6 (579-641)||(12782147-12782209)
chr6 (471-557)||(33060083-33060169)
chr6 (605-643)||(33060228-33060266)
chr6 (471-557)||(33265410-33265496)
chr6 (471-557)||(33274554-33274640)
chr6 (609-643)||(33641986-33642020)
chr6 (476-557)||(9169391-9169472)
chr6 (51-168)||(33402758-33402875)
[»] scaffold0570 (1 HSPs)
scaffold0570 (607-651)||(9737-9781)
[»] chr8 (2 HSPs)
chr8 (402-454)||(6472953-6473005)
chr8 (596-650)||(6473158-6473212)
[»] chr3 (7 HSPs)
chr3 (606-643)||(23353881-23353918)
chr3 (606-643)||(23406730-23406767)
chr3 (606-643)||(23441861-23441898)
chr3 (606-643)||(23449251-23449288)
chr3 (606-643)||(23465384-23465421)
chr3 (606-643)||(23474393-23474430)
chr3 (606-643)||(36025448-36025485)
[»] scaffold0201 (1 HSPs)
scaffold0201 (607-643)||(13559-13595)


Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 10 - 651
Target Start/End: Original strand, 31159340 - 31159992
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31159340 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccg 31159439  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaaagtcaccaaataacaacaaatcattacattaagaa 209  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159440 atatattcgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaaagtcaccaaataacaacaaatcattacattaagaa 31159539  T
Q  210 attaaaacaaaaagcatgtgagcaggcgaagacaacacaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaa 309  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159540 attaaaacaaaaagcatgtgagcaggcgaagacaacaaaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaa 31159639  T
Q  310 aacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaattgcttacttatgacgcatatccca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  31159640 aacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaatttcttacttatgatgcatatccca 31159739  T
Q  410 accagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctcca 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31159740 accagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatctttcttcgtgtttggcaagggcttctcca 31159839  T
Q  510 taacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttcca-----------gcagtgaaggatgtattcca 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||           ||||||||||||||||||||    
T  31159840 taacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaacacgagttccagaaacttgactgcagtgaaggatgtattcca 31159939  T
Q  599 actctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaata 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31159940 actctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaata 31159992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 259 - 640
Target Start/End: Complemental strand, 31489371 - 31488973
Alignment:
Q  259 tccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaaaacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcat 358  Q
    ||||| ||||||| |||||| || |||| ||||||||||||||||||||||| |||||||| || || |||||||||||||||| ||||||||||||| |    
T  31489371 tccttgtagagaactgttgtgctaaactttagtttgaaaagggaaagtgaaatcaaatatacatggtaaaatttaattgtcaaagccttaaaatttgctt 31489272  T
Q  359 atg------taaaaccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctt 452  Q
    |||      |||||| ||||||   ||||| ||||||||||||| ||| | |||||| || |||| |||  | |||||||| |||  | |||||||||||    
T  31489271 atggaaaagtaaaacaatcaattaatagaagattgcttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctt 31489172  T
Q  453 tgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcat 552  Q
    |||||||  |  || |||||||||||| ||| ||| ||||||| || |||||| || ||| |||| ||||||||||||||||||||||||||||||||||    
T  31489171 tgtaccacatgagagtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcat 31489072  T
Q  553 agaaactagggagaacacgagttcca-----------gcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgaga 640  Q
    | |||  ||| ||||||||  |||||           | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  31489071 aaaaaacaggaagaacacgtcttccaaaaacttgactgtagtgaaggatgtattccaattctcgcaagcaccaagttgaggaagcatagtttttggaga 31488973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 31019891 - 31020112
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||  ||| || ||||||| ||||||||||||| ||||||| ||||||||||    
T  31019891 acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca 31019990  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaa-aagtcaccaaataacaacaaatcattacattaag- 207  Q
    ||||||    |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| || ||| | |||||||   ||||||||| |||||     
T  31019991 atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattac-ttaaga 31020089  T
Q  208 aaattaaaacaaaaagcatgtga 230  Q
    |||||||||||||||||||||||    
T  31020090 aaattaaaacaaaaagcatgtga 31020112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 31029772 - 31029993
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| ||  ||| || ||||||| ||||||||||||| ||||||| ||||||||||    
T  31029772 acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca 31029871  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaa-aagtcaccaaataacaacaaatcattacattaag- 207  Q
    ||||||    |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| || ||| | |||||||   ||||||||| |||||     
T  31029872 atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattac-ttaaga 31029970  T
Q  208 aaattaaaacaaaaagcatgtga 230  Q
    |||||||||||||||||||||||    
T  31029971 aaattaaaacaaaaagcatgtga 31029993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 31489655 - 31489435
Alignment:
Q  10 acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca 109  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| || |||| || ||||||| ||||||||||||| ||||| | ||||||||||    
T  31489655 acatcatcaatggagtccaaaagtaatagatttgctactttatctatatgagaattcataccaactagttcttttggaagagatgaataattgtgaccca 31489556  T
Q  110 atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtt-ttaaaaagtcaccaaataacaacaaatcattacattaaga 208  Q
    ||||||    |||||| ||||||||||||| ||||||| ||||||||||||||||||||   ||||||||| | |||||||   |||||||||| ||||     
T  31489555 atatattcaatatctcgtcaacaatctttttaatctcttcatattgaggcctgaaagttaagaaaaagtcaaccaataacacttaatcattaca-taagg 31489457  T
Q  209 aattaaaacaaaaagcatgtga 230  Q
    ||||||||||||||| ||||||    
T  31489456 aattaaaacaaaaagaatgtga 31489435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 324 - 640
Target Start/End: Original strand, 31030127 - 31030460
Alignment:
Q  324 gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa------ccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagaga 417  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||      | ||||||   ||||| ||||||||||||| ||| | |||||| |||||||    
T  31030127 gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaagtaaaacaatcaattaatagaatattgcttacttatcacgaagatcccagccagaga 31030226  T
Q  418 gattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttcc 517  Q
     |||  | |||||||| |||  | ||||||| ||||||||||  |  ||||||||||||||| ||| ||| ||||||| || |||||| || ||| ||||    
T  31030227 tattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcc 31030326  T
Q  518 attttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttcca-----------gcagtgaaggatgtattccaactctcgc 606  Q
     ||||||||||||||||||||||||||||||||||| |||  ||| ||||||||  |||||           ||||| |||||||| | |||| ||||||    
T  31030327 tttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgc 31030426  T
Q  607 aagcaccatgttgaggaagcatagttttttgaga 640  Q
    |||||||| |||||||||||||||||||| ||||    
T  31030427 aagcaccaagttgaggaagcatagtttttggaga 31030460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 324 - 640
Target Start/End: Original strand, 31020246 - 31020579
Alignment:
Q  324 gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa------ccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagaga 417  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||      | ||||||   ||||| ||||||||||||| ||| | |||||| |||||||    
T  31020246 gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaagtaaaacaatcaattaatagaatattgcttacttatcacgaagatcccagccagaga 31020345  T
Q  418 gattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttcc 517  Q
     |||  | |||||||| |||  | ||||||| ||||||||||  |  || |||||||||||| ||| ||| ||||||| || |||||| || ||| ||||    
T  31020346 tattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcc 31020445  T
Q  518 attttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttcca-----------gcagtgaaggatgtattccaactctcgc 606  Q
     ||||||||||||||||||||||||||||||||||| |||  ||| ||||||||  |||||           ||||| |||||||| | |||| ||||||    
T  31020446 tttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgc 31020545  T
Q  607 aagcaccatgttgaggaagcatagttttttgaga 640  Q
    |||||||| |||||||||| ||||||||| ||||    
T  31020546 aagcaccaagttgaggaagaatagtttttggaga 31020579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 388 - 557
Target Start/End: Original strand, 31162097 - 31162264
Alignment:
Q  388 cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc 487  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||| ||  | ||||||||||||| |||||||| || || ||||||||| ||| |||    
T  31162097 cttacttatgacgcacatcccaaccagag--attggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttggaatctttgttc 31162194  T
Q  488 gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
     ||||||  || ||||||  ||||| |||| ||||||| ||||| |||| ||||||||||||||||||||    
T  31162195 atgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaa 31162264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 643
Target Start/End: Original strand, 31528977 - 31529243
Alignment:
Q  388 cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc 487  Q
    ||||||||| ||| ||||||||||| || |||||||||||||| || |||  || |||||||| ||| |  | ||| |  || |||| |||| |||| ||    
T  31528977 cttacttatcacgtatatcccaacctgaaagattggcgacttgcgtgagagctgtcctccatccttgcaggacctcagtgtcttgtttgaatctttcctc 31529076  T
Q  488 gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttccag-------- 579  Q
     |||| |||||  |||| |  |||||| ||| |||| | || |||||| |||||||||||||||||||||  ||||||||||||  ||||||            
T  31529077 atgttgggcaaatgcttttttataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgt 31529176  T
Q  580 ---cagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaaga 643  Q
       || ||||||||||||| ||| || ||||||||||| ||||||||||||||||| ||||||||||    
T  31529177 acgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaaga 31529243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 557
Target Start/End: Complemental strand, 31496575 - 31496422
Alignment:
Q  404 atcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggct 503  Q
    |||||||||||||||||  ||||||||| |||||  | ||||||||||||| |||||||  || || ||||||||| ||| ||| |||||| |||  |||    
T  31496575 atcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttcatgtttgacaaatgct 31496476  T
Q  504 tctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    || |||||| ||||| |||| | || ||||  |||||| |||||||||||||||    
T  31496475 tcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaa 31496422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 388 - 556
Target Start/End: Original strand, 31150820 - 31150988
Alignment:
Q  388 cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc 487  Q
    ||||||||| ||| | |||||| |||||||||||||| |||||||| ||   | ||||||||||||| || || ||  | |  ||||||||| |||||||    
T  31150820 cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc 31150919  T
Q  488 gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaa 556  Q
     ||||| || | ||||||  |||||| ||| ||||||| || |||||| || |||||||||||||||||    
T  31150920 atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaa 31150988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 31034133 - 31034207
Alignment:
Q  70 ccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatc 144  Q
    |||||||| ||||||||||||| ||||||   || ||||||| ||| | ||||||||||||||||||||||||||    
T  31034133 ccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttttcaatc 31034207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 31150437 - 31150600
Alignment:
Q  8 ggacatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacc 107  Q
    ||||||||||||  ||||||||||||||  | ||| ||| ||  | || |||| |||  || || ||||| | ||||||||||   ||||| |||| |||    
T  31150437 ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc 31150536  T
Q  108 caatatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtttta 171  Q
    ||| |||| |   ||||||||||| ||||||||||||||||||| ||| |||||| ||||||||    
T  31150537 caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagtttta 31150600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 31528560 - 31528659
Alignment:
Q  70 ccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttt 169  Q
    |||||||| || |||||||| | ||||||||||  |  |||||||| |  |||||||||||||||||||| |||||||||  | || |||||||||||||    
T  31528560 ccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgctgactggggcctgaaagttt 31528659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 31163374 - 31163416
Alignment:
Q  281 tcaactatagtttgaaaagggaaagtgaaaacaaatatatatt 323  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  31163374 tcaactatagtttgaaaagagaaagtgaaatcaaatatatatt 31163416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 31476650 - 31476589
Alignment:
Q  389 ttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatc 450  Q
    |||||||| ||| | ||||||||||||||||| |||||||||||| |||  |||||||||||    
T  31476650 ttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatc 31476589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 557
Target Start/End: Complemental strand, 31501760 - 31501592
Alignment:
Q  389 ttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcg 488  Q
    |||||||| ||| | ||| |||||||| |||  |||||||||||| |||  | ||||||||||| | |||||||  || || ||||||||| ||| |||     
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  489 tgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    |||||| |||  ||||| | |||| | ||| |||| | || |||| | | |||||||||||||||||||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaa 31501592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 31034801 - 31034834
Alignment:
Q  384 attgcttacttatgacgcatatcccaaccagaga 417  Q
    |||||||||||||||||||||||||| |||||||    
T  31034801 attgcttacttatgacgcatatcccatccagaga 31034834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 31482280 - 31482235
Alignment:
Q  584 gaaggatgtattccaactctcgcaagcaccatgttgaggaagcata 629  Q
    ||||||||||| |||| || ||||||||||| ||||||||||||||    
T  31482280 gaaggatgtataccaattcacgcaagcaccaagttgaggaagcata 31482235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 17438801 - 17438641
Alignment:
Q  14 catcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccaatat 113  Q
    ||||||| ||||||||||||||  |||||  || |  ||||||| || ||||||| |||||||| ||||||| |  ||||||| |||||    |||||||    
T  17438801 catcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcccaactaaatcttttgaattacatgaagatttgcattccaatat 17438702  T
Q  114 atgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaa 174  Q
    ||   |||||| || ||||||||||| |||||||||| |||| ||||||||||||| ||||    
T  17438701 attcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagtttgaaaa 17438641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 12781400 - 12781458
Alignment:
Q  583 tgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaa 641  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||||| || |||||    
T  12781400 tgaaggatgtattccaattctcgcaaacaccaagttgaggaagcatagttcttagagaa 12781458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 557
Target Start/End: Original strand, 33288074 - 33288189
Alignment:
Q  442 ccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaagg 541  Q
    |||||||||||   |||||||  || || ||||||||| ||| ||| ||| ||| || |||||| |||||| | ||| |||| | || ||||||||||||    
T  33288074 ccctccatcttgacaccatctgagagtcttgttggaatgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaagg 33288173  T
Q  542 atcaacatcatagaaa 557  Q
    ||||||||||||||||    
T  33288174 atcaacatcatagaaa 33288189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 12785590 - 12785648
Alignment:
Q  583 tgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaa 641  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || |||||    
T  12785590 tgaaggatgtattccaattctcgcaaacaccaagttgaagaagcatagttcttagagaa 12785648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 567
Target Start/End: Original strand, 12786226 - 12786303
Alignment:
Q  490 gtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaa 567  Q
    |||||||||||| ||| |||||||  ||| |||| | || |||||||||||||||||||||||| ||| |||| ||||    
T  12786226 gtttggcaagggattcgccataaccaccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa 12786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 13608696 - 13608643
Alignment:
Q  401 catatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg 454  Q
    |||||||||||||||||||||||| |||||||||||   | |||||||||||||    
T  13608696 catatcccaaccagagagattggctacttgtgttagggctcccctccatctttg 13608643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 641
Target Start/End: Original strand, 33288248 - 33288284
Alignment:
Q  605 gcaagcaccatgttgaggaagcatagttttttgagaa 641  Q
    ||||||||||||||||||||||||||||| |||||||    
T  33288248 gcaagcaccatgttgaggaagcatagtttcttgagaa 33288284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 569
Target Start/End: Complemental strand, 33642258 - 33642071
Alignment:
Q  382 aaattgcttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaattt 481  Q
    ||||| ||||||||| ||| | |||||||||||||| | |  | |||||| |||||  | |||||||||||   ||||| |   | || ||||||||| |    
T  33642258 aaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatct 33642159  T
Q  482 ttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaaca 569  Q
    || ||| |||||| |||  ||||| | |||| ||||| |||| | ||  ||||||||||||||||||||||| ||| |||| ||||||    
T  33642158 ttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaaca 33642071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 641
Target Start/End: Original strand, 12782147 - 12782209
Alignment:
Q  579 gcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaa 641  Q
    ||||| |||||||||| | || |||||||| ||||| ||||| |||||||||||||| |||||    
T  12782147 gcagttaaggatgtatgctaattctcgcaaacaccaagttgaagaagcatagtttttagagaa 12782209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33060083 - 33060169
Alignment:
Q  471 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    ||||||||| ||| ||| |||||| |||  ||||| | |||| ||||| |||| |  | ||||||||||||||||||||||||||||    
T  33060083 tgttggaatctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaa 33060169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 643
Target Start/End: Original strand, 33060228 - 33060266
Alignment:
Q  605 gcaagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  33060228 gcaagcaccacgttgaggaagcatagttctttgagaaga 33060266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33265410 - 33265496
Alignment:
Q  471 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    ||||||||| ||| ||| ||||||  || |||||| |||||| | ||| |||| | |||||| ||||| ||||||||||||||||||    
T  33265410 tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa 33265496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33274554 - 33274640
Alignment:
Q  471 tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    ||||||||| ||| ||| ||||||  || |||||| |||||| | ||| |||| | |||||| ||||| ||||||||||||||||||    
T  33274554 tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa 33274640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 609 - 643
Target Start/End: Complemental strand, 33642020 - 33641986
Alignment:
Q  609 gcaccatgttgaggaagcatagttttttgagaaga 643  Q
    ||||||||||||||||||||||||| |||||||||    
T  33642020 gcaccatgttgaggaagcatagtttcttgagaaga 33641986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 557
Target Start/End: Original strand, 9169391 - 9169472
Alignment:
Q  476 gaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa 557  Q
    |||| ||| ||| ||||||||||  ||||| | |||| | ||| |||| | || ||||||||||||||||||||||||||||    
T  9169391 gaatctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaa 9169472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 33402758 - 33402875
Alignment:
Q  51 ttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatctctgca 150  Q
    |||||||||| |||  || |||||||| ||||||| || ||||||| |||||    |||||||||   |||||| || ||||||||||| ||||||| ||    
T  33402758 ttctataggagaatcaatcccaactaaatcttttgaaacacatgaagatttgcactccaatatattcattatcttttgaacaatctttttaatctctcca 33402857  T
Q  151 tattgaggcctgaaagtt 168  Q
      ||| ||||||||||||    
T  33402858 gcttgtggcctgaaagtt 33402875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 651
Target Start/End: Complemental strand, 9781 - 9737
Alignment:
Q  607 aagcaccatgttgaggaagcatagttttttgagaagagtacaata 651  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||    
T  9781 aagcaccattttgaggaagcatagttttctgagaagattacaata 9737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 6472953 - 6473005
Alignment:
Q  402 atatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg 454  Q
    ||||||||||||||||||||||| |||||||||||   | |||||||||||||    
T  6472953 atatcccaaccagagagattggctacttgtgttagggctcccctccatctttg 6473005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 650
Target Start/End: Original strand, 6473158 - 6473212
Alignment:
Q  596 ccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaat 650  Q
    |||| ||| ||||||||||||| || |||||||||||||||||||| | ||||||    
T  6473158 ccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaat 6473212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23353881 - 23353918
Alignment:
Q  606 caagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23353881 caagcaccattttgaggaagcatagttttctgagaaga 23353918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23406730 - 23406767
Alignment:
Q  606 caagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23406730 caagcaccattttgaggaagcatagttttctgagaaga 23406767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23441861 - 23441898
Alignment:
Q  606 caagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23441861 caagcaccattttgaggaagcatagttttctgagaaga 23441898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23449251 - 23449288
Alignment:
Q  606 caagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23449251 caagcaccattttgaggaagcatagttttctgagaaga 23449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23465384 - 23465421
Alignment:
Q  606 caagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23465384 caagcaccattttgaggaagcatagttttctgagaaga 23465421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23474393 - 23474430
Alignment:
Q  606 caagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23474393 caagcaccattttgaggaagcatagttttctgagaaga 23474430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 36025448 - 36025485
Alignment:
Q  606 caagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  36025448 caagcaccattttgaggaagcatagtcttttgagaaga 36025485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 607 - 643
Target Start/End: Original strand, 13559 - 13595
Alignment:
Q  607 aagcaccatgttgaggaagcatagttttttgagaaga 643  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  13559 aagcaccattttgaggaagcatagttttctgagaaga 13595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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