View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_high_9 (Length: 526)
Name: NF18737_high_9
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 24 - 509
Target Start/End: Complemental strand, 6602783 - 6602298
Alignment:
| Q |
24 |
gagaaaatcaatatcctcttgatcatcagtgccggtactctcactggaagactcccagtcagaatcagtcatctgagcttccatcaactatatgcctgtc |
123 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602783 |
gagaaaatcaatatcctcttgatcatcagtgccgctactctcactggaagactcccagtcagaatcagtcatctgagcttccatcaactatatgcctgtc |
6602684 |
T |
|
| Q |
124 |
ataatttgcgtcatagttaacatcagtgctacaagaaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaaca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602683 |
ataatttgcgtcatagttaacatcagtgctacaagaaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaaca |
6602584 |
T |
|
| Q |
224 |
aatccgtaaaggaatattaacgataaataaggattcaagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602583 |
aatccgtaaaggaatattaacgataaataaggattcaagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaa |
6602484 |
T |
|
| Q |
324 |
tcaacaacggatgagtcgatactgacttcagaggatatttgtatacaatacaaaatgtgtctaattgatacctatgcttgtcacagatacaaagccagtt |
423 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602483 |
tcaacaacggatgagtcgatactgacttcagaggatatttgtatacaatacaaaatgtgtctaattgatacctatgcttgtcacagatacaaagccagtt |
6602384 |
T |
|
| Q |
424 |
tcttaaaaaggaagaataccttcaccactgaaaattaaatgccaaaggagatttgcccgaaaggacagggataactggagtctatt |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602383 |
tcttaaaaaggaagaataccttcaccactgaaaattaaatgccaaaggagatttgcccgaaaggacagggataactggagtctatt |
6602298 |
T |
|
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Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 24 - 509
Target Start/End: Original strand, 3700763 - 3701254
Alignment:
| Q |
24 |
gagaaaatcaatatcctcttgatcatcagtgccggtactctcactggaagactcccagtcagaatcagtcatctgagcttccatcaactatatgcctgtc |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3700763 |
gagaaaatcaatatcctcttgatcgtcactgccgctgctctcactggaagactcccagtctgaatcagtcatctgagcttccatcaactatatgcctgtc |
3700862 |
T |
|
| Q |
124 |
ataatttgcgtcatagttaacatcagtgctacaagaaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaaca |
223 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
3700863 |
ataatttg--tcacagttaacatcaatgctacaagaaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaaca |
3700960 |
T |
|
| Q |
224 |
aatccgtaaaggaatattaacgataaataaggattcaagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaa |
323 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3700961 |
aatccttaaaggaatattccaaataaataaggattcaagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaa |
3701060 |
T |
|
| Q |
324 |
tcaacaacggatgagtcgatactgacttcagaggatatt-tgtatacaatacaaaatgtgtctaattgatacctatgcttgtcacagatacaaagccagt |
422 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
3701061 |
tcaacaacggatgagtcgataccaacttcagaggatattctgtatataatacaaaatgtgtctgattgatacctatgcttgtcacagatacaaagccagt |
3701160 |
T |
|
| Q |
423 |
ttcttaaaaaggaagaataccttcaccactg-------aaaattaaatgccaaaggagatttgcccgaaaggacagggataactggagtctatt |
509 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
3701161 |
ttcttgaaaagaaagaataccttcaccactgaaactgaaaaattaaatgccaaaggagatttgcccaacaggacagggataactggagtctatt |
3701254 |
T |
|
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