View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_12 (Length: 467)
Name: NF18737_low_12
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 40733179 - 40733357
Alignment:
| Q |
1 |
cacaatgaagacaaacatcaagaaatataaagttatcgcatatagtgtgtttacaacgtacaaagccatacatcataaaaaatatctatttgttaagcca |
100 |
Q |
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| T |
40733179 |
cacaatgaagacaaacatcaagaaatataaagttatcgcatatagtgtgtttacaacgtacaaagccatacagcataaaaaatatctatttgttaagcca |
40733278 |
T |
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| Q |
101 |
tgccaattgccaagctgtataagcatagtgattagcacacaaaccagtcaaatgatagaataaacatgttatatgaccaaaaacaa |
186 |
Q |
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| T |
40733279 |
-------tgccaagctgtataagcatagtgattagcacacaaaccagtcaaatgatagaaaaaacatgttatatgaccaaaaacaa |
40733357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 199 - 358
Target Start/End: Original strand, 40733345 - 40733509
Alignment:
| Q |
199 |
tgaccaaaaacaaaataatcctaatgatgatgactttatcccacatgtagcatatttactgcataagtctaacatatagccattgtaataataagat--- |
295 |
Q |
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| T |
40733345 |
tgaccaaaaacaaaataattctaatgatgatgactttatcgcacatgtagcatatttactgcataagtctaacatatagccattgtaataataagatagg |
40733444 |
T |
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| Q |
296 |
--aggaaagcaaaccaagatgaagaagaaatagagaacaaaaaaggatgaaaatgataggtctta |
358 |
Q |
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| T |
40733445 |
aaaggaaagcaaaccaagatgaagaagaaatagagaacaaaaaaggatgaaaatgataggtctta |
40733509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 40733615 - 40733703
Alignment:
| Q |
362 |
gaggaaccattggggtgatcaatagcaccatattcattgaggaaagccagacaaa-gtaacttttgtctggcgccttaactggatagtt |
449 |
Q |
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| T |
40733615 |
gaggagccattggggtgatcaatagcaccatattcattgaggaaagccagacaaaggtaacttttgtctggcgccttaactggatagtt |
40733703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 48753215 - 48753183
Alignment:
| Q |
139 |
acaaaccagtcaaatgatagaataaacatgtta |
171 |
Q |
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| T |
48753215 |
acaaaccagtcaaataatagaataaacatgtta |
48753183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 38462758 - 38462684
Alignment:
| Q |
111 |
caagctgtataagcatagtgatta---gcacacaaaccagtcaaatgatagaataaacatgttatatgaccaaaa |
182 |
Q |
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| T |
38462758 |
caagctttataaacatagtgattattagcacacaaaacagtcaaataatagaataaacatgttatatgaccaaaa |
38462684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 37472511 - 37472442
Alignment:
| Q |
254 |
ttactgcataagtctaacatatagccattgtaataataagataggaaagcaaaccaagatgaagaagaaat |
324 |
Q |
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| T |
37472511 |
ttaccgcataaatctaacatatagccactgtaacaa-aagatatgaaagcaaaccgatatgaaaaagaaat |
37472442 |
T |
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