View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18737_low_13 (Length: 466)
Name: NF18737_low_13
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 5531817 - 5531383
Alignment:
| Q |
13 |
aatatcaaattaacctcttacatnnnnnnngcacacaaacattatgatccctgaaaccaaatttcaaaggaagttaacaatcaacagttcatgatagtaa |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531817 |
aatatcaaattaacctcttacataaaaaaagcacacgaacattatgatccctgaaaccaaatttcaaaggaagttaacaatcaacagttcatgatagtaa |
5531718 |
T |
|
| Q |
113 |
aataaatcaaaaacctattaacagcaacaagacataagtgtttgcaactctccctagataaccacacagaaacttacaactacaacttcatttcatctaa |
212 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531717 |
aataaatcaaaaacatattaacagcaacaagacataagtgtttgcaactctccctagataaccacacagaaacttacaactacaacttcatttcatctaa |
5531618 |
T |
|
| Q |
213 |
gaaaaatcaaacaaaccctaacaaatctatcggaatttcaaacaagttaaataaaaccaaaccctgcaagcaataacaaagggctaattgaacccataca |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531617 |
gaaaaaccaaacaaaccctaacaaatctatcggaatttcaaacaagttaaataaaaccaaaccctgcaagcaataacaaagggctaattgaacccataca |
5531518 |
T |
|
| Q |
313 |
agaatcccccacaactgtataaaaacacatcaacacttcaactacaacttcattagttcaaacaaacactaattaatccatcaccacattgaatcaacaa |
412 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531517 |
agaatcacccacaactgtataaaaacacatcaacacttcaactacaacttcattagttcaaacaaacactaattaatccatcaccacattgaatcaacaa |
5531418 |
T |
|
| Q |
413 |
atccccaaatttcaaaacaagtcagaaaacacatc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5531417 |
atccccaaatttcaaaacaagtcagaaaacacatc |
5531383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University