View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_16 (Length: 424)
Name: NF18737_low_16
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 46367134 - 46366747
Alignment:
| Q |
16 |
catggcatggcacatttaatgcacttagagtcactgagatttgtttttcatatacaagtgaagaaggcatgggcttgttttgtttccgcatgtagacata |
115 |
Q |
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| T |
46367134 |
catggcatggcacatttaatgcacttagagtcactgagatttgtttttcatatacaagggaag---gcatgggcttgttttgtttccgcatgtagacata |
46367038 |
T |
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| Q |
116 |
tggttatggttatg------taattaatattttcttttgctaataaaactagtatatagtacatgcaatttatatatctatcttcatttcatcacataaa |
209 |
Q |
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| T |
46367037 |
tggttatggttatggttatgtaatttatattttcttttgctaataaaactagtatatagtacatgcaatttatatatctatcttcatttcatcacataaa |
46366938 |
T |
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| Q |
210 |
agatgtagtactcctagcagattaaggacaaagatgatgaagactgtggatgatgggcaagaccggttccttttttgaacttcgggatttgtttttgcat |
309 |
Q |
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| T |
46366937 |
agatgtagtactcctagcagattaaggacaaagatgatg----------------ggcaagaccggttccttttttgaacttcgggatttgtttttgcat |
46366854 |
T |
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| Q |
310 |
tgtcattgtgaacttgtagtactataaacaaattaaataatgtggatttgtttcacactatggtcgtggttgtggacaaagaaagggcatgtttgagatt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46366853 |
tgtcattgtgaacttgtagtactataaacaaattaaataatgtggatttgtttcacactatggtcgtggttgtggacaaagaaagggcatgtttgagatt |
46366754 |
T |
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