View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_19 (Length: 389)
Name: NF18737_low_19
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_19 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 36676084 - 36676446
Alignment:
| Q |
10 |
aagaatatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaattatagaagcttgatcaccctgcattcaccaacaacaaataaacaaa |
109 |
Q |
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| T |
36676084 |
aagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaattatagaagcttgatcaccctgcattcaccaacaacaaataaacaaa |
36676183 |
T |
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| Q |
110 |
cacactcagnnnnnnnnnnnngtcttagccctctagtttctagaagaagggagctctggtaatctaaagttcgaccaagaacatgtaactgcatgttata |
209 |
Q |
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| T |
36676184 |
cacactcagttttttgtttttgtcttagccctctagtttctagaagaagggagctctggtaatctaaagttcgaccaagaacatgtaactgcatgttata |
36676283 |
T |
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| Q |
210 |
atcacgatgagtttaaaatcaaagtgacacaccgtgattctacgaaactcatcgttaatctaaacatataatattgtaagtgatgttatgtaagtagtaa |
309 |
Q |
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| T |
36676284 |
atcacgatgagtttaaaatcaaagtgacacaccgtgattctacgaaactcatcgttaatctaaacat---atattgtaagtgatgttatgtaagtagtaa |
36676380 |
T |
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| Q |
310 |
gtagtaagtaccctttggatgtgagaatctggcattagagagcgaagaatagaaagatactcattc |
375 |
Q |
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| T |
36676381 |
gtagtaagtaccctttggatgtgagaatctggcattagagagcgaagaatagaaagatactcattc |
36676446 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 46922099 - 46922039
Alignment:
| Q |
26 |
tgctcaagctctttaacaaagttaatagctcctccaattatagaagcttgatcaccctgca |
86 |
Q |
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| T |
46922099 |
tgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca |
46922039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 26581 - 26548
Alignment:
| Q |
50 |
atagctcctccaattatagaagcttgatcaccct |
83 |
Q |
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| T |
26581 |
atagcccctccaattatagaagcttgatcaccct |
26548 |
T |
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