View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_low_22 (Length: 373)

Name: NF18737_low_22
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_low_22
NF18737_low_22
[»] chr3 (4 HSPs)
chr3 (9-367)||(29821876-29822219)
chr3 (43-94)||(49333873-49333923)
chr3 (18-92)||(54653010-54653085)
chr3 (39-92)||(43102304-43102357)
[»] chr5 (3 HSPs)
chr5 (95-237)||(40880222-40880364)
chr5 (39-94)||(1663507-1663562)
chr5 (45-94)||(10084988-10085037)
[»] chr6 (2 HSPs)
chr6 (2-46)||(24546535-24546579)
chr6 (335-368)||(4030718-4030751)
[»] chr8 (2 HSPs)
chr8 (13-92)||(118777-118856)
chr8 (39-94)||(5777111-5777166)
[»] chr1 (1 HSPs)
chr1 (18-92)||(3978364-3978439)
[»] chr7 (1 HSPs)
chr7 (18-94)||(38407199-38407275)
[»] chr4 (1 HSPs)
chr4 (18-94)||(26791090-26791166)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 29822219 - 29821876
Alignment:
Q  9 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaacatgataaatgattgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  29822219 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaatatgatagatgattgt 29822120  T
Q  109 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttcttcatgattcgataa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29822119 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaaaaagaaaggaaggctggaagtttttctgaatattttcttcatgattccataa 29822020  T
Q  209 acgtacaatcattcaaatacatattacatgataactaacttcctagaaaatagcagttactaaactacataattctaaactgcataattatagaaactga 308  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||               |||||||||||||||||||||||    
T  29822019 aagtacaatcattcaaatacatattacatggaaactaacttcctagaaaatggtagttacta---------------aactgcataattatagaaactga 29821935  T
Q  309 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29821934 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 29821876  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 49333923 - 49333873
Alignment:
Q  43 atcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaaca 94  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  49333923 atcaaccttttcaacaaccacaaacaccc-aatctcaatttcaacaacaaca 49333873  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 54653010 - 54653085
Alignment:
Q  18 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaa 92  Q
    ||||||||||||| || | || ||||| |||||||||||| |||| |||||| | ||| |||||||||||||||||    
T  54653010 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 54653085  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 43102304 - 43102357
Alignment:
Q  39 caacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaa 92  Q
    ||||| |||||||||||| |||| ||||||  |||||| |||||||||||||||    
T  43102304 caacaacaaccttttcaacaaccacaaacattccaatcccaatttcaacaacaa 43102357  T

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Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 40880222 - 40880364
Alignment:
Q  95 tgataaatgattgttagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttct 194  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||    
T  40880222 tgatagatgattgttaaagaagtagtgattatcccaattcgagaagggatgagtctcctaaagaagaaaggaaggctgtaagtttttatgaatattttct 40880321  T
Q  195 tcatgattcgataaacgtacaatcattcaaatacatattacat 237  Q
    | ||||||| | ||||||||||||||||||||||| |||||||    
T  40880322 taatgattcaacaaacgtacaatcattcaaatacacattacat 40880364  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 1663507 - 1663562
Alignment:
Q  39 caacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaaca 94  Q
    ||||| |||| ||||||| |||| |||||| | |||||||||||||||||||||||    
T  1663507 caacaacaactttttcaacaaccacaaacatctcaatctcaatttcaacaacaaca 1663562  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 10084988 - 10085037
Alignment:
Q  45 caaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaaca 94  Q
    |||||||||||| |||| | ||||  ||||||||||||||||||||||||    
T  10084988 caaccttttcaacaaccacgaacattccaatctcaatttcaacaacaaca 10085037  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 24546579 - 24546535
Alignment:
Q  2 catcaacaacaagaacatttcttcattacaatatcagcaacatca 46  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  24546579 catcaacaacaagaacatttcttcatcacaataccagcaacatca 24546535  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 4030751 - 4030718
Alignment:
Q  335 taaactatttaacatatataattttgatgatgtc 368  Q
    ||||||||||||||| ||||||||||||||||||    
T  4030751 taaactatttaacatgtataattttgatgatgtc 4030718  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 118856 - 118777
Alignment:
Q  13 agaacatttcttcattacaat-atcagcaacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaa 92  Q
    |||| |||||||||| ||||| | || ||||||||||||||||| || ||  ||||||||||||||||||||||| |||||    
T  118856 agaaaatttcttcatcacaattagcaacaacatcaaccttttcataa-ccataaacaccccaatctcaatttcaataacaa 118777  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 5777166 - 5777111
Alignment:
Q  39 caacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaaca 94  Q
    ||||| |||||||||||| || | |||||| ||||||||||||| |||||||||||    
T  5777166 caacaacaaccttttcaacaatctcaaacaacccaatctcaattccaacaacaaca 5777111  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 3978364 - 3978439
Alignment:
Q  18 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaa 92  Q
    ||||||||||||| || | || ||||| |||||||||||| |||| |||||| | ||| |||||||||||||||||    
T  3978364 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 3978439  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 38407275 - 38407199
Alignment:
Q  18 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaaca 94  Q
    |||||||||| ||||| | || ||||||||||||||||| || ||  || ||||| ||||||||||||||||||||||    
T  38407275 atttcttcatcacaattagcaacaacatcaaccttttcataa-ccataatcaccctaatctcaatttcaacaacaaca 38407199  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 26791166 - 26791090
Alignment:
Q  18 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccgcaaacaccccaatctcaatttcaacaacaaca 94  Q
    ||||||||||||| || | || ||||| |||||||||||| |||| |||||| ||| ||||||||||||||| |||||    
T  26791166 atttcttcattaccatgaacaacaacaacaaccttttcaacaaccacaaacatccc-atctcaatttcaacagcaaca 26791090  T

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