View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18737_low_23 (Length: 354)
Name: NF18737_low_23
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 26299380 - 26299034
Alignment:
| Q |
14 |
cactttgttcaaattttgctaccctatagccgctatttggcaacactgatcatcaacactacaaccaagattatctattggttccacaatttagaggtta |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26299380 |
cactttattcaaattttgctaccctatagccgctatttggcaacactgatcatcaacactacaaccaagattatctattggttccacaatttagaggtta |
26299281 |
T |
|
| Q |
114 |
tcattgagaagctaagtgaagtataagatattcttttggag-----------tgttttctagtgagaaacatgaagcactccataagaaatcctaataca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26299280 |
tcattgagaagctaagtgaagtataagatattcttttggagcgaaaagcgagtgttttctagtgagagacatgaagcactccataagaaatcctaataca |
26299181 |
T |
|
| Q |
203 |
gtattggtgtatataagaaaggaaggccaaaacataaaaattgaagcaaaatgatttaaataaataccacaggcattgaagcacagtatctgcagcagat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26299180 |
gtattggtgtatataagaaaggaaggccagaacataaaaattgaagcaaaatgatttaaataaataccacatgcattgaagcacagtatctgcagcagat |
26299081 |
T |
|
| Q |
303 |
gcttcttcaagagatctcacagcagccaaaaaagcaacattcctatg |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26299080 |
gcttcttcaagagatctcacagcagccaaaaaagcaacattcctatg |
26299034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University