View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_25 (Length: 345)
Name: NF18737_low_25
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 54885508 - 54885825
Alignment:
| Q |
12 |
ataggttgagaacgctatgtaatagtcgttgttcaaagcactttatttatacttaagtctctggtgtctgttgtttccatccaacgatgtgggacttggc |
111 |
Q |
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| T |
54885508 |
ataggctgagaacgctatgtaatggtcgttgttcaaagcactttatttatacttaagtctctggtgtctgttgtttccatccaacgatgtgggacttggc |
54885607 |
T |
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| Q |
112 |
cacaagtaactcagcacagcaccaccaacaaccttgctattctacttctaccttaaactttgaatattggaaagaagcatttttaccacaattagttaac |
211 |
Q |
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| T |
54885608 |
cacaagtaactcagcacagcaccaccaacaaccttgctattctacttctaccttaaactttgaatattggaaagaagcatttttaccacaattagttaac |
54885707 |
T |
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| Q |
212 |
acggctcgataaaaaattcttgtttaaactttctaataatgcttcatccttacattgagtttaaaagtgactttaagattagctaaatacatgatctgtt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54885708 |
acggctcgataaaaaattcttgtttaaactttctaataatgtttcatccttacattgagtttaaaagtgactttaagattagctaaatacatgatctgtt |
54885807 |
T |
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| Q |
312 |
tccataataccatacatg |
329 |
Q |
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|||||||||||||||||| |
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| T |
54885808 |
tccataataccatacatg |
54885825 |
T |
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