View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_27 (Length: 338)
Name: NF18737_low_27
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 657774 - 658083
Alignment:
| Q |
16 |
atgcaatgagatgtatttaaacaatccagattatagaatttattataattccatttcatatcattcaatattagtcaatacttaattttaccataaataa |
115 |
Q |
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| T |
657774 |
atgcaatgagatgtatttaaacaatccagattatagaatttattataattccatttcatatcattcaatattagtcaatacttaattgtaccataaataa |
657873 |
T |
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| Q |
116 |
aagagaaattagtattaataagtgnnnnnnngtggaaacctgttttctttcttttctaatgcaaaactacaag--aaaagagtcattttggtaatgagtg |
213 |
Q |
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| T |
657874 |
aagagaaattagtattaataagtgaaaaaaagtggaaacctgttttctttcttttctaatgcaaaactataagcaaaaagagtcattttggtaatgagtg |
657973 |
T |
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| Q |
214 |
agggtatgcataaac-nnnnnnngacaagtgagatattctttttctgtcatcaagattttaacataacactataaattaagctttgactgaaaagttaat |
312 |
Q |
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| T |
657974 |
agggtatgcataaacttttttttgacaagtgagatattctttttctgtcatcaagattttaacataacactataaattaagctttgactgaaaagttaat |
658073 |
T |
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| Q |
313 |
tagagctgac |
322 |
Q |
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| T |
658074 |
tagagctgac |
658083 |
T |
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