View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_29 (Length: 334)
Name: NF18737_low_29
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 24358137 - 24358445
Alignment:
| Q |
9 |
gattattctgtgacaagtatgttcctgtagtactattattgaagaatccacacccagaacctgacatgatcgtgttgaaaactgtgttttgcattgttgg |
108 |
Q |
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| T |
24358137 |
gattattctgtgacaagtatgttcctgttgtactattattgaagaatccacatccagaacctgacataatggtgttgaaaactgtgttttgcattgttgg |
24358236 |
T |
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| Q |
109 |
tggtgatggagatgaagtattgaacataggcataaaatgattatcgatatgttgttgatcttgtgttgaagaagttataaaacctcccatgttatggtct |
208 |
Q |
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| T |
24358237 |
tggtgatggagatgaagtattgaacataggcataaaatgattatcgatatgttgttgatcttgtgttgaagaagttataaaacctcccatgttatggtct |
24358336 |
T |
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| Q |
209 |
ttgttagggtcgtacgaggattcatcgcttgcgtttggtgaagtgttcgacgacatgttcttgagtcttttctttattgttgaattccaaaagttcttga |
308 |
Q |
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| T |
24358337 |
ttgttagggtcgtacgaggattcatcgcttgcgtttggtgaagtgttcaacgacatgttcttgagtcttttctttattgttgaattccaaaagttcttga |
24358436 |
T |
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| Q |
309 |
tttcattgt |
317 |
Q |
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| T |
24358437 |
tttcattgt |
24358445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 41830758 - 41830815
Alignment:
| Q |
260 |
gacatgttcttgagtcttttctttattgttgaattccaaaagttcttgatttcattgt |
317 |
Q |
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| T |
41830758 |
gacaagttcttaagtcttttctttatagttgaattccaaaagttttttatttcattgt |
41830815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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