View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18737_low_36 (Length: 269)
Name: NF18737_low_36
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 5111863 - 5112088
Alignment:
| Q |
28 |
tctatctatctatatgtgttgaactaaaggagaaattccaaaaggaattggtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcaca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
5111863 |
tctatctatctatatgtgttgaactaaaggagaaattccaaaaggaattggtgatcttacagaactgaacacggtcaaccttgaagataatttgctcaca |
5111962 |
T |
|
| Q |
128 |
ggcaacatattaatgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5111963 |
ggcaacatattaatgttcaacaacacatcattgcaatacttatatcttggatataataatatgaccggcgttcttccatcaaatgtttgtcaatggcttc |
5112062 |
T |
|
| Q |
228 |
caaaccttagattactctatcttttt |
253 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5112063 |
caaaccttagattactctatcttttt |
5112088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 41 - 250
Target Start/End: Original strand, 5095118 - 5095327
Alignment:
| Q |
41 |
atgtgttgaactaaaggagaaattccaaaaggaattggtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcacaggcaacatattaa |
140 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||||||||| | ||||| |||| | |||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
5095118 |
atgtattgaactaaaggagaaattcccaaagaaattggtgatctttcacaattgaaaatggtcaaccttcaagataatttcctcgtaggcaacatattaa |
5095217 |
T |
|
| Q |
141 |
tgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaaccttagatt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5095218 |
tgttcaacaacacatcattgcaatacttatatcttggatataataatatgaccggcattcttccatcaaatgtttgtcaagagcttccaaaccttagatc |
5095317 |
T |
|
| Q |
241 |
actctatctt |
250 |
Q |
| |
|
|||||||||| |
|
|
| T |
5095318 |
actctatctt |
5095327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 5083229 - 5083013
Alignment:
| Q |
44 |
tgttgaactaaaggagaaattccaaaaggaattggtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcacaggcaacatatta---- |
139 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| ||||||||||| | ||| |||||| || ||||| ||| |||||||||||||| |
|
|
| T |
5083229 |
tgttgaactaaaggtgaaattcctaaaggaattggtgatcttacacaactgagaacggtaaaccttcaacgcaattttctctcaggcaacatattatcga |
5083130 |
T |
|
| Q |
140 |
-----atgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaacct |
234 |
Q |
| |
|
|||||||||| | |||| |||||| | || |||| | ||||||| |||| ||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
5083129 |
cattaatgttcaacagctcatcgttgcaaaatttggcacttggttttaataatctgactggcattcttccatcaaatgtttgtcaaggacttccaaacct |
5083030 |
T |
|
| Q |
235 |
tagattactctatcttt |
251 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
5083029 |
tagattactttatcttt |
5083013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 14427599 - 14427404
Alignment:
| Q |
56 |
ggagaaattccaaaaggaattggtgatcatacacaactgaacaaggtcaaccttaaagataatttgctcacaggcaacatattaatgttcaacaacacat |
155 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| || ||||| || ||||| |||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
14427599 |
ggagaaattccgaaaggaattggtgatcttacacaactgagatttgtgaacctgcaatataatatgctcacaggtaacatattgatgttcaacaactcat |
14427500 |
T |
|
| Q |
156 |
cattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaaccttagattactctatcttt |
251 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||| || || |||||| ||||| |||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
14427499 |
cgttgcaatacttatatcttggatataataatatgactggaatccttccaacaaatatttgtctagggcttccaaaccttagatcactctatcttt |
14427404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 16874655 - 16874770
Alignment:
| Q |
136 |
attaatgttcaacaacacatcattgcaatacttatatcttgaatataataatatgaccggcattcttccatcaaatgtttgtcaatggcttccaaacctt |
235 |
Q |
| |
|
|||||||||||||| | |||| |||||||| || |||| | |||||| |||| || ||||||||||||||| |||||||| || ||||||| ||| |
|
|
| T |
16874655 |
attaatgttcaacagctcatctttgcaatatttggcacttggttttaataacctgactggtattcttccatcaaatatttgtcaagggtttccaaatctt |
16874754 |
T |
|
| Q |
236 |
agattactctatcttt |
251 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
16874755 |
aaattactctatcttt |
16874770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 16874554 - 16874600
Alignment:
| Q |
44 |
tgttgaactaaaggagaaattccaaaaggaattggtgatcatacaca |
90 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
16874554 |
tgttgaacaaaaggtgaaattccaaaaggaattggtgatcttacaca |
16874600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University