View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_38 (Length: 256)
Name: NF18737_low_38
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31890169 - 31889937
Alignment:
| Q |
1 |
tccctaccaactgagttaagctcgcgaggacggcggaacattttagattaatgtcatagaaatgttttcaggtaagacatatatattgcctaatgtaatt |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |
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| T |
31890169 |
tccctaccaactgagctaagctcgcgaggacggcggaacattttagattaatgtcatagaaatgttttcaggtaagacagatat--tgcctaat-----t |
31890077 |
T |
|
| Q |
101 |
gtgtgtggatctctcgatgtgcatggatttgctatgctctgccgtagttttagctgttgctttgtatcaattttcattttataatataggttggagtatt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31890076 |
gtgtgtggatctgtcgatgtgcatggatttgctatgctctgccgtagttttagctgttgctttgtatcaattttcattttataatataggttggagtatt |
31889977 |
T |
|
| Q |
201 |
tcttatacattcattctaatattttttcttaggtgttaaa |
240 |
Q |
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|||||||||||||||||||| |||||| |||||||||||| |
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| T |
31889976 |
tcttatacattcattctaatgttttttgttaggtgttaaa |
31889937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 21318290 - 21318320
Alignment:
| Q |
1 |
tccctaccaactgagttaagctcgcgaggac |
31 |
Q |
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| T |
21318290 |
tccctaccaactgagttaagctcgcgaggac |
21318320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 11846419 - 11846391
Alignment:
| Q |
3 |
cctaccaactgagttaagctcgcgaggac |
31 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11846419 |
cctaccaactgagttaagctcgcgaggac |
11846391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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