View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_4 (Length: 689)
Name: NF18737_low_4
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 54 - 674
Target Start/End: Original strand, 35445017 - 35445636
Alignment:
| Q |
54 |
cattgtgagagatcaggctaaaagttgaaatatactcagaccacagatgtttagttaccaaagctagtattaaactgcaaaaacttaacttgctctaatt |
153 |
Q |
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| T |
35445017 |
cattgtgagagatcaggctaaaagttgaaatatactcagaccacagatgtttagttatcaaagctagtattaaactgcaaaaacttaacttgctctaatt |
35445116 |
T |
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| Q |
154 |
atcgaaaccaattctacaaatcttttatctaatnnnnnnnggaggaatcattaacacaaaatccctcaaactccatttttacactaattaccaaaacaga |
253 |
Q |
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| T |
35445117 |
atcgaaaccaattctacaa-tcttttatctaataaaaaaaggaggaatcattaacacaaaatccctcaaactccatttttacactaattaccaaaacaga |
35445215 |
T |
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| Q |
254 |
atgccgttatcaccaaaaattatccccaaaaataatatgggaaaagcaaacagaatggtaccagcaacacataccattcatagtcattcttatcagtttc |
353 |
Q |
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| T |
35445216 |
atgccgttatcaccaaaaattatccccaaaaataatgtgggaaaagcaaacagaatggtaccagcaacacataccattcatagtcattcttatcagtttc |
35445315 |
T |
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| Q |
354 |
agaattgagaaaatcatcagcagcaccagtcctacgcacaggagcttcagttgatgatgaaatgttaaataagtgagaatcctttggattcaagtctgca |
453 |
Q |
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| T |
35445316 |
agaattgagaaaatcatcagcagcaccagtcctacgcacaggagcttcagttgatgatgaaatgttaaataagtgagaatcctttggattcaaatctgca |
35445415 |
T |
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| Q |
454 |
acatacaaaaatcatagataatagttaataccaacaacatcaataaaataaatccaacaactaaggattttgcagttcttcacttccagccaacaaaaac |
553 |
Q |
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| T |
35445416 |
acatacaaaaatcatagataatagttaataccaacaacatcaataaaataaatccaacaactaaggattttgcagttcttcacttccatccaataaaaac |
35445515 |
T |
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| Q |
554 |
catgattatcataaggaatcaacaaaaacacataatcatcatcatgcaggcagatcaacaaaaaccaaaaccttaacaccaaacaagtgctcttcacttc |
653 |
Q |
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| T |
35445516 |
catgattatcatgaggaatcaacaaaaacacataatcatcatcatgcaggcaaatcaacaaaaaccaaaaccttaacaccaaacaagtgctcttcacttc |
35445615 |
T |
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| Q |
654 |
aaaatgtgttatatatatact |
674 |
Q |
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| T |
35445616 |
aaaatgtgttatatatatact |
35445636 |
T |
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