View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_47 (Length: 235)
Name: NF18737_low_47
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 161211 - 160993
Alignment:
| Q |
3 |
tgacattgttctagggcaatgaggttccttaaaacacattctgttgtgtgatcaaccttcaattgcggaatcctaagacgcgctttgaaatgattcaaac |
102 |
Q |
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| T |
161211 |
tgacattgttctagggcaatgaggttccttaaaacacattctgttgtgtgatcaaccttcaattgcggaatcctaagacgcgctttgaaatgattcaaac |
161112 |
T |
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| Q |
103 |
atgaaaatgaaggtaaacaacctaagcagagaaaattacttagaaatggtttcttctcaaatgttatgtctagtaatcttctccccacaactttctcaaa |
202 |
Q |
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| T |
161111 |
ataaaaatgaaggtaaacaacctaagcagagaaaattacttagaaatggtttcttctcaaatgttatgtctagtaatcttctccccacaactttctcaaa |
161012 |
T |
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| Q |
203 |
actcacaccagaatccatt |
221 |
Q |
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||||||||||||||||||| |
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| T |
161011 |
actcacaccagaatccatt |
160993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 152734 - 152520
Alignment:
| Q |
3 |
tgacattgttctagggcaatgaggttccttaaaacacattctgttgtgtgatcaaccttcaattgcggaatcctaagacgcgctttgaaatgattcaaac |
102 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||| |
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| T |
152734 |
tgacattgttctagggcaatgaggttccttagaacgcattctgttgtgtgatcaaccttcaattgcggaatcattagacgtgctttgaaattgttcaaac |
152635 |
T |
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| Q |
103 |
atgaaaatgaaggtaaacaacctaagcagagaaaattacttagaaatggtttcttctcaaatgttatgtctagtaatcttctccccacaactttctcaaa |
202 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
152634 |
atgaaaaagaaggtaaacaacctaagcagagaaaataacttagaaactgtttcttctcaaattttatgtctagtaatcttctccccgggaatttctcaaa |
152535 |
T |
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| Q |
203 |
actcacaccagaatc |
217 |
Q |
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||||||||||||||| |
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| T |
152534 |
actcacaccagaatc |
152520 |
T |
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