View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_low_48 (Length: 224)

Name: NF18737_low_48
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_low_48
NF18737_low_48
[»] chr7 (1 HSPs)
chr7 (13-208)||(7977813-7978012)
[»] chr4 (4 HSPs)
chr4 (52-111)||(8186375-8186434)
chr4 (79-171)||(661866-661960)
chr4 (72-166)||(642008-642104)
chr4 (72-112)||(571331-571371)
[»] chr8 (2 HSPs)
chr8 (59-114)||(18314651-18314706)
chr8 (71-114)||(18318656-18318699)
[»] chr5 (1 HSPs)
chr5 (148-208)||(32268614-32268674)
[»] chr1 (1 HSPs)
chr1 (79-113)||(7555206-7555240)
[»] chr6 (3 HSPs)
chr6 (85-114)||(6427195-6427224)
chr6 (79-111)||(6395545-6395577)
chr6 (72-112)||(28935339-28935379)
[»] chr2 (1 HSPs)
chr2 (64-113)||(1036625-1036674)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 7977813 - 7978012
Alignment:
Q  13 aagcaaagggaaacaatcggct--gagaaacacgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttgtaatattttgggag 110  Q
    |||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7977813 aagcaaagggaaacaatctgctatgagaaacatgtggttgatattaatagattcaatgttagaacatttgagtgaggtcaaagttgcaatattttgggag 7977912  T
Q  111 aaaaact---aacccataagccggaatggtagggtggttggagagattgagtgacgtgattttctatgggaaacaagaaatttggcggagaagcttgttg 207  Q
    |||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7977913 aaaa-ctggcaacccataagccggaatggtagggtggttggagagattgagtgacgtgattttcaatgggaaacaagaaatttggcggagaagcttgttg 7978011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 8186434 - 8186375
Alignment:
Q  52 tattaatagattcaatgttagaacatttgagtgaggtcaaagttgtaatattttgggaga 111  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  8186434 tattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggaga 8186375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 661866 - 661960
Alignment:
Q  79 tgagtgaggtcaaagttgtaatattttgggagaaaaact---aacccataagccggaatggtagggtggttggagagattgagtgacgtgattttc 171  Q
    |||| ||||| ||||||||||||| ||||||||||  ||   || |||| ||| |||||||| |  ||||||||||||||||||||||||||||||    
T  661866 tgagagaggttaaagttgtaatatattgggagaaag-ctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgtgattttc 661960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 642008 - 642104
Alignment:
Q  72 gaacatttgagtgaggtcaaagttgtaatattttgggagaaaaact--aacccataagccggaatggtagggtggttggagagattgagtgacgtga 166  Q
    ||||||||||| || || ||||||| ||| || ||||||||| | |  ||||||| ||| |||||||| |   ||||||||||||||||||||||||    
T  642008 gaacatttgagagaagttaaagttgaaatcttctgggagaaagattgcaacccattagcaggaatggtggatcggttggagagattgagtgacgtga 642104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 571331 - 571371
Alignment:
Q  72 gaacatttgagtgaggtcaaagttgtaatattttgggagaa 112  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  571331 gaacaattgagagatgtcaaagttgtaatattttgggagaa 571371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 18314706 - 18314651
Alignment:
Q  59 agattcaatgttagaacatttgagtgaggtcaaagttgtaatattttgggagaaaa 114  Q
    ||||| ||||| |||||||  ||||||||||||||||||||||||||| |||||||    
T  18314706 agattgaatgtaagaacatgagagtgaggtcaaagttgtaatattttgagagaaaa 18314651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 18318699 - 18318656
Alignment:
Q  71 agaacatttgagtgaggtcaaagttgtaatattttgggagaaaa 114  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||    
T  18318699 agaacatgtgagtgaggtcaaagttgtaatatttttgcagaaaa 18318656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 32268614 - 32268674
Alignment:
Q  148 gagagattgagtgacgtgattttctatgggaaacaagaaatttggcggagaagcttgttga 208  Q
    ||||||||||||||||||| |||| |||| |||| ||| ||||| | ||||||||||||||    
T  32268614 gagagattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagcttgttga 32268674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 7555206 - 7555240
Alignment:
Q  79 tgagtgaggtcaaagttgtaatattttgggagaaa 113  Q
    |||||||||| ||||||||||||||||||||||||    
T  7555206 tgagtgaggttaaagttgtaatattttgggagaaa 7555240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 6427195 - 6427224
Alignment:
Q  85 aggtcaaagttgtaatattttgggagaaaa 114  Q
    ||||||||||||||||||||||||||||||    
T  6427195 aggtcaaagttgtaatattttgggagaaaa 6427224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 6395545 - 6395577
Alignment:
Q  79 tgagtgaggtcaaagttgtaatattttgggaga 111  Q
    |||| ||||||||||||||||||||||||||||    
T  6395545 tgagagaggtcaaagttgtaatattttgggaga 6395577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 28935339 - 28935379
Alignment:
Q  72 gaacatttgagtgaggtcaaagttgtaatattttgggagaa 112  Q
    |||||| |||||||||| ||||||||||| |||||||||||    
T  28935339 gaacatgtgagtgaggttaaagttgtaatgttttgggagaa 28935379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 1036674 - 1036625
Alignment:
Q  64 caatgttagaacatttgagtgaggtcaaagttgtaatattttgggagaaa 113  Q
    ||||||| |||||  |||| || |||||||||||||||||||||||||||    
T  1036674 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaa 1036625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University