View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_low_49 (Length: 219)

Name: NF18737_low_49
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_low_49
NF18737_low_49
[»] scaffold0050 (1 HSPs)
scaffold0050 (76-204)||(7897-8028)
[»] chr2 (12 HSPs)
chr2 (2-75)||(15782590-15782663)
chr2 (3-75)||(19048754-19048826)
chr2 (3-76)||(11459714-11459787)
chr2 (3-66)||(11816607-11816670)
chr2 (3-76)||(10639662-10639735)
chr2 (3-75)||(33083610-33083682)
chr2 (5-75)||(39831501-39831571)
chr2 (4-77)||(11708676-11708749)
chr2 (2-63)||(40825213-40825274)
chr2 (32-76)||(29659303-29659347)
chr2 (4-76)||(34460368-34460440)
chr2 (19-75)||(42578180-42578236)
[»] chr8 (11 HSPs)
chr8 (2-64)||(39435293-39435355)
chr8 (3-66)||(18752350-18752413)
chr8 (3-75)||(70579-70651)
chr8 (3-75)||(6602574-6602646)
chr8 (3-75)||(6678027-6678099)
chr8 (4-75)||(12534775-12534846)
chr8 (3-76)||(42192695-42192768)
chr8 (2-62)||(22203713-22203773)
chr8 (3-75)||(35779553-35779625)
chr8 (2-66)||(39303318-39303382)
chr8 (7-51)||(41849291-41849335)
[»] chr3 (19 HSPs)
chr3 (6-64)||(50729535-50729593)
chr3 (6-64)||(50783256-50783314)
chr3 (3-75)||(41377584-41377656)
chr3 (3-75)||(42392861-42392933)
chr3 (3-75)||(51665981-51666053)
chr3 (3-75)||(54158266-54158338)
chr3 (2-75)||(40756782-40756856)
chr3 (5-75)||(52500838-52500908)
chr3 (3-76)||(7824510-7824583)
chr3 (19-64)||(8137703-8137748)
chr3 (3-76)||(29689538-29689611)
chr3 (3-75)||(4601425-4601497)
chr3 (3-63)||(36229050-36229110)
chr3 (3-75)||(43247706-43247778)
chr3 (3-75)||(54151737-54151809)
chr3 (7-44)||(8526152-8526189)
chr3 (3-64)||(35461535-35461596)
chr3 (3-51)||(9349732-9349780)
chr3 (21-69)||(55320473-55320521)
[»] chr4 (21 HSPs)
chr4 (1-62)||(51287614-51287675)
chr4 (1-76)||(12767086-12767161)
chr4 (3-76)||(1173950-1174023)
chr4 (4-77)||(12735429-12735502)
chr4 (3-66)||(19225268-19225331)
chr4 (3-76)||(18257328-18257401)
chr4 (7-76)||(53457823-53457892)
chr4 (3-75)||(19849559-19849631)
chr4 (3-75)||(34739280-34739352)
chr4 (3-75)||(45874055-45874127)
chr4 (4-75)||(54768489-54768560)
chr4 (3-77)||(238514-238588)
chr4 (4-50)||(1083533-1083579)
chr4 (4-50)||(6328908-6328954)
chr4 (4-66)||(13849363-13849427)
chr4 (4-69)||(39284632-39284697)
chr4 (3-64)||(43139962-43140023)
chr4 (6-74)||(46194249-46194318)
chr4 (3-75)||(26424914-26424985)
chr4 (3-75)||(32441140-32441212)
chr4 (3-43)||(33770600-33770640)
[»] chr1 (11 HSPs)
chr1 (2-75)||(29994438-29994511)
chr1 (3-76)||(45813067-45813140)
chr1 (3-75)||(32007074-32007146)
chr1 (3-75)||(41808202-41808274)
chr1 (4-66)||(15104052-15104115)
chr1 (3-66)||(29587261-29587324)
chr1 (3-81)||(48660016-48660094)
chr1 (4-66)||(17540133-17540197)
chr1 (3-75)||(5055844-5055916)
chr1 (6-66)||(5943690-5943750)
chr1 (4-44)||(44836175-44836215)
[»] scaffold0038 (1 HSPs)
scaffold0038 (3-75)||(114252-114324)
[»] chr6 (7 HSPs)
chr6 (3-75)||(11572008-11572080)
chr6 (3-75)||(28322932-28323004)
chr6 (3-76)||(33621493-33621566)
chr6 (3-75)||(21000692-21000764)
chr6 (3-75)||(33704216-33704288)
chr6 (5-64)||(4464138-4464197)
chr6 (24-81)||(32354017-32354074)
[»] chr7 (14 HSPs)
chr7 (3-81)||(25112303-25112381)
chr7 (1-78)||(10220526-10220603)
chr7 (3-64)||(11355834-11355895)
chr7 (3-66)||(29484811-29484874)
chr7 (92-139)||(29499345-29499392)
chr7 (3-60)||(47961011-47961068)
chr7 (4-64)||(29255728-29255788)
chr7 (4-76)||(48444209-48444281)
chr7 (2-77)||(40642972-40643047)
chr7 (6-75)||(7162847-7162916)
chr7 (3-76)||(31770588-31770661)
chr7 (3-76)||(44083939-44084012)
chr7 (5-66)||(47250309-47250370)
chr7 (3-75)||(4106738-4106810)
[»] chr5 (9 HSPs)
chr5 (5-80)||(4925586-4925661)
chr5 (4-75)||(9577018-9577089)
chr5 (4-75)||(12257356-12257427)
chr5 (3-77)||(35317753-35317827)
chr5 (5-77)||(2970982-2971054)
chr5 (3-76)||(1191596-1191669)
chr5 (3-76)||(3386956-3387029)
chr5 (18-63)||(6670361-6670406)
chr5 (3-75)||(13203957-13204029)
[»] scaffold1348 (1 HSPs)
scaffold1348 (3-75)||(918-990)
[»] scaffold0053 (1 HSPs)
scaffold0053 (3-64)||(22174-22235)
[»] scaffold0032 (1 HSPs)
scaffold0032 (3-75)||(56481-56553)


Alignment Details
Target: scaffold0050 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 7897 - 8028
Alignment:
Q  76 agaaaagttatttgtatgagaagatgatacaaggttatagatatgtatagtaatta-tcgttag--ttagttattagtgagaaatacgtcactaagtgaa 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |||   ||||||||||||||||||||||||||||||||||    
T  7897 agaaaagttatttgtatgagaagatgatacaaggttatagatatgtgtagtaattagtaattatcattagttattagtgagaaatacgtcactaagtgaa 7996  T
Q  173 tgaaattgtactatatagttagttctgttttt 204  Q
    ||||||||||||||||||||||||||||||||    
T  7997 tgaaattgtactatatagttagttctgttttt 8028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 15782663 - 15782590
Alignment:
Q  2 tcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||||||| | |||||||||| ||||||||||||| ||||||||| | ||||||||||| ||||||||    
T  15782663 tcgggttcgaacccgggtcatgacgtccgaccttacaatttcggcatttgtcaattgagctaggacttttagac 15782590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 19048826 - 19048754
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||||||  ||||||||||||| || |||||    
T  19048826 cgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 19048754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 11459787 - 11459714
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | |||||||||| |||||| |||||| ||||||||  ||||||||||||| || ||||||    
T  11459787 cgggttcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagaca 11459714  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 11816607 - 11816670
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    ||||||||||||||| ||| |||||| |||||| |||||| ||||||||  |||||||||||||    
T  11816607 cgggttcgaacccaggtcacgacgtccgaccttgcaatttcggcatttgccagttgagctagga 11816670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 10639662 - 10639735
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  10639662 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 10639735  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 33083610 - 33083682
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  33083610 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33083682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 39831501 - 39831571
Alignment:
Q  5 ggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||| |||||||||||| | |||| |||||| || |||||  ||||||||||||| || |||||    
T  39831501 ggttcgaacccggatcatgacgtccggccttgcaatttcggtatttgccagttgagctaggacttatagac 39831571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 11708749 - 11708676
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacag 77  Q
    |||||||||||| | |||  ||||| | ||||||||||| ||||||||  ||||||||||||| || |||||||    
T  11708749 gggttcgaacccgggtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttctagacag 11708676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 40825213 - 40825274
Alignment:
Q  2 tcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagcta 63  Q
    |||| ||||||||| | ||||||||||  |||||| ||||||||||||||  ||||||||||    
T  40825213 tcggattcgaacccgggtcatgacgtccaaccttataattttggcatttgacagttgagcta 40825274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 29659303 - 29659347
Alignment:
Q  32 ccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||||||||||  ||||||||||||| || ||||||    
T  29659303 ccttacaattttggcatttgccagttgagctaggacttctagaca 29659347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 34460440 - 34460368
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    |||||||||||| | |||  ||||| | |||| |||||| ||||||||| ||||||||||||| || ||||||    
T  34460440 gggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctaggacttctagaca 34460368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42578236 - 42578180
Alignment:
Q  19 tcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||| |||||| |||||| ||||||||  ||||||||||||| || |||||    
T  42578236 tcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 42578180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 39435355 - 39435293
Alignment:
Q  2 tcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||||||  |||||||||||    
T  39435355 tcgggttcgaacccagatcatgacgtccgaccttgcaattttgacatttgccagttgagctag 39435293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 18752413 - 18752350
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    ||||||||||||| ||||| |||||| ||||||||||||| || |||||| |||||| ||||||    
T  18752413 cgggttcgaaccccgatcacgacgtccgaccttacaatttcggtatttgtcagttgaactagga 18752350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 70579 - 70651
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||| ||||| | |||||||||| |||||| |||||| ||||||||  ||||||||||||| || |||||    
T  70579 cgggttcaaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 70651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 6602574 - 6602646
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  6602574 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6602646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 6678027 - 6678099
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  6678027 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6678099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 12534775 - 12534846
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||||| ||||| |||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  12534775 gggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 12534846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 42192695 - 42192768
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||| | | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  42192695 cgggttcgaactcgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 42192768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 22203773 - 22203713
Alignment:
Q  2 tcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagct 62  Q
    |||| ||||||||| | ||| ||||||||||||| |||||| || |||||| |||||||||    
T  22203773 tcggattcgaacccgggtcacgacgtctgaccttgcaatttcggtatttgtcagttgagct 22203713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 35779553 - 35779625
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||  ||||| | |||| |||||||||||||||  ||||||||||||| || |||||    
T  35779553 cgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagac 35779625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 39303382 - 39303318
Alignment:
Q  2 tcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    |||||||| ||||||  |||||||||| | |||| |||||| ||||||||  |||||||||||||    
T  39303382 tcgggttcaaacccatgtcatgacgtccggccttgcaatttcggcatttgccagttgagctagga 39303318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 41849291 - 41849335
Alignment:
Q  7 ttcgaacccagatcatgacgtctgaccttacaattttggcatttg 51  Q
    ||||||||||||||| |||||| |||||| |||||| ||||||||    
T  41849291 ttcgaacccagatcacgacgtccgaccttgcaatttcggcatttg 41849335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 50729593 - 50729535
Alignment:
Q  6 gttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  50729593 gttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctag 50729535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 50783256 - 50783314
Alignment:
Q  6 gttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  50783256 gttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctag 50783314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 41377656 - 41377584
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||  |||||||||||| | ||||||||||||||||||||  ||||||||||||| || |||||    
T  41377656 cgggttcgaacctggatcatgacgtccggccttacaattttggcatttgccagttgagctaggacttctagac 41377584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 42392861 - 42392933
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||| ||| |||||||||||| |||||| |||||| ||||||||  ||||||||||||| || |||||    
T  42392861 cgggttcgagcccggatcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 42392933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 51665981 - 51666053
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||||| |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  51665981 cgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 51666053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 54158338 - 54158266
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| |||||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  54158338 cgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54158266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 40756782 - 40756856
Alignment:
Q  2 tcgggttcgaacccagatcatga-cgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||| || |||||||| ||||||||||| |||||||||||||| | ||||||| ||||| || |||||    
T  40756782 tcgggttcgaatccggatcatgatcgtctgaccttgcaattttggcatttttcagttgagttaggacttctagac 40756856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 52500908 - 52500838
Alignment:
Q  5 ggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||| |||||||||||| | ||||||||||| | ||||||  ||||||||||||| || |||||    
T  52500908 ggttcgaacccggatcatgacgtccggccttacaatttcgacatttgccagttgagctaggacttctagac 52500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 7824510 - 7824583
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  7824510 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 7824583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 8137703 - 8137748
Alignment:
Q  19 tcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||    
T  8137703 tcatgacgtccgaccttgcaatttttgcatttgttagttgagctag 8137748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 29689538 - 29689611
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  29689538 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 29689611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 4601497 - 4601425
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  4601497 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 4601425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 36229050 - 36229110
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagcta 63  Q
    ||||||||||||| |||||||||||| | |||| |||||| ||||||||  ||||||||||    
T  36229050 cgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagcta 36229110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 43247706 - 43247778
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||||| |||  ||||| | |||| |||||||||||||||  ||||||||||||| || |||||    
T  43247706 cgggttcgaacccaggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagac 43247778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 54151737 - 54151809
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  54151737 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54151809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 8526152 - 8526189
Alignment:
Q  7 ttcgaacccagatcatgacgtctgaccttacaattttg 44  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  8526152 ttcgaaccccgatcatgacgtctgacctaacaattttg 8526189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 35461535 - 35461596
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    ||||||||||||| |||||  ||||| |||||| |||||| ||||||||  |||||||||||    
T  35461535 cgggttcgaacccggatcacaacgtccgaccttgcaatttcggcatttgccagttgagctag 35461596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 9349732 - 9349780
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttg 51  Q
    ||||||||||||| ||||| |||||| |||||| |||||| ||||||||    
T  9349732 cgggttcgaacccggatcacgacgtccgaccttgcaatttcggcatttg 9349780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 55320473 - 55320521
Alignment:
Q  21 atgacgtctgaccttacaattttggcatttgttagttgagctaggattt 69  Q
    |||||||| ||| ||||||||||||||||||| | ||||||||| ||||    
T  55320473 atgacgtccgactttacaattttggcatttgtcaattgagctagaattt 55320521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 51287675 - 51287614
Alignment:
Q  1 ttcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagct 62  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  51287675 ttcgggtttaaacccagatcacgacgtctgaccttacaattttggcatttgtcagctgagct 51287614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 12767161 - 12767086
Alignment:
Q  1 ttcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||| |||||||||||||||||||||| || |||||||||| |||||||   ||||||||||||| || ||||||    
T  12767161 ttcggattcgaacccagatcatgacgtccgatcttacaatttcggcatttaccagttgagctaggacttctagaca 12767086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 1174023 - 1173950
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||||| |||||||||| | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  1174023 cgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 1173950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 12735502 - 12735429
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacag 77  Q
    |||||||||||| | |||  ||||||| ||||||||||||||||||||| ||||||||||| | || |||||||    
T  12735502 gggttcgaacccgggtcacaacgtctggccttacaattttggcatttgtcagttgagctagtacttctagacag 12735429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 19225331 - 19225268
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    ||||||||||||| |||||||||||| | | ||||||||| ||||||||  |||||||||||||    
T  19225331 cgggttcgaacccggatcatgacgtccggctttacaatttcggcatttgccagttgagctagga 19225268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 18257401 - 18257328
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    |||| |||||||| |||||||||||| | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  18257401 cgggctcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 18257328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 53457892 - 53457823
Alignment:
Q  7 ttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||| | |||||||||| |||||| |||||| ||||||||  ||||||||||||| || ||||||    
T  53457892 ttcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagaca 53457823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 19849559 - 19849631
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| ||||| |||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  19849559 cgggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 19849631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 34739352 - 34739280
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  34739352 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 34739280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 45874127 - 45874055
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||  ||||| | |||| |||||||||||||||| ||||||||||||| || |||||    
T  45874127 cgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgtcagttgagctaggacttctagac 45874055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 54768489 - 54768560
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  54768489 gggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 238514 - 238588
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacag 77  Q
    ||||||||||||||| ||||| ||||   |||| |||||| ||||||||  ||||||||||||| || |||||||    
T  238514 cgggttcgaacccaggtcatggcgtccagccttgcaatttcggcatttgacagttgagctaggacttctagacag 238588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 1083579 - 1083533
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcattt 50  Q
    |||||||||||| ||||||||| |||||||| ||||||| |||||||    
T  1083579 gggttcgaaccccgatcatgacatctgacctaacaatttcggcattt 1083533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 6328908 - 6328954
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcattt 50  Q
    |||||||||||| ||||  |||||||||||| |||||||||||||||    
T  6328908 gggttcgaaccccgatcgagacgtctgacctaacaattttggcattt 6328954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 13849427 - 13849363
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggca--tttgttagttgagctagga 66  Q
    |||||||||||| ||||| |||||||||||| ||||||| | ||  ||||| |||||||||||||    
T  13849427 gggttcgaaccccgatcaagacgtctgacctaacaatttcgacatttttgtcagttgagctagga 13849363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 39284632 - 39284697
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggattt 69  Q
    |||||||||||| | ||||||| || | ||| ||||||| ||||||||  ||||||||||||||||    
T  39284632 gggttcgaaccccggtcatgacatccggcctaacaatttcggcatttgccagttgagctaggattt 39284697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 43139962 - 43140023
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  |||||||||||    
T  43139962 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctag 43140023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 46194318 - 46194249
Alignment:
Q  6 gttcgaacccagatcatgacgtctgaccttacaattttggcattt-gttagttgagctaggatttttaga 74  Q
    |||||||||| ||||||||| || ||||| ||||||||| ||||| |  ||||||||||||| |||||||    
T  46194318 gttcgaaccctgatcatgacatccgacctaacaattttgacattttgccagttgagctaggacttttaga 46194249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 26424914 - 26424985
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  26424914 cgggttcgaacccgggtcatgacgtccg-ccttgcaatttcggcatttgccagttgagctaggacttctagac 26424985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 32441140 - 32441212
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||| ||||| |||| |||||| | ||||||  ||||||||||||| || |||||    
T  32441140 cgggttcgaacccgggtcatgatgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 32441212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 33770640 - 33770600
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaatttt 43  Q
    |||||||||||||| ||||||||||  ||||||||||||||    
T  33770640 cgggttcgaacccaaatcatgacgttcgaccttacaatttt 33770600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 29994438 - 29994511
Alignment:
Q  2 tcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||||||| |||||||||||||| |||| |||||| ||||||||  ||||||||||||| || |||||    
T  29994438 tcgggttcgaacccggatcatgacgtctggccttgcaatttcggcatttgccagttgagctaggacttctagac 29994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 45813067 - 45813140
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | ||| || ||| |||||| |||||| ||||||||| ||||||||||||| || ||||||    
T  45813067 cgggttcgaacccgggtcacgatgtccgaccttgcaatttcggcatttgtcagttgagctaggacttctagaca 45813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 32007146 - 32007074
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  32007146 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 32007074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 41808274 - 41808202
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  41808274 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 41808202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 15104115 - 15104052
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggca-tttgttagttgagctagga 66  Q
    |||||||||||| ||||||||| || | ||| |||||||||||| ||||| |||||||||||||    
T  15104115 gggttcgaaccccgatcatgacatccggcctaacaattttggcattttgtcagttgagctagga 15104052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 29587324 - 29587261
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    ||||||||||||||| ||| |||||| | |||| |||||| ||||||||  |||||||||||||    
T  29587324 cgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgagctagga 29587261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 48660094 - 48660016
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacagaaaa 81  Q
    ||||||||||||| | |||| ||||| | |||| |||||| ||||||||  ||||||||||||| || |||||| ||||    
T  48660094 cgggttcgaacccgggtcataacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagacaaaaaa 48660016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 17540133 - 17540197
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgt--tagttgagctagga 66  Q
    |||||||||||| | |||||||||||| ||| ||||||| ||||||| |  ||||||||||||||    
T  17540133 gggttcgaaccccggtcatgacgtctggcctaacaatttcggcatttttactagttgagctagga 17540197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 5055844 - 5055916
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  || |||||||||| || |||||    
T  5055844 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagctgagctaggacttctagac 5055916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 5943750 - 5943690
Alignment:
Q  6 gttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    |||||||||| | ||| |||||| | |||| |||||| ||||||||| |||||||||||||    
T  5943750 gttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgtcagttgagctagga 5943690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 44836175 - 44836215
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttg 44  Q
    |||||||||||| |||||||||||| ||||| |||||||||    
T  44836175 gggttcgaaccccgatcatgacgtccgacctaacaattttg 44836215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 114324 - 114252
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||||||  ||||||||||||| || |||||    
T  114324 cgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 114252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 11572080 - 11572008
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | ||| |||||||| |||||||||||  |||||||||||||||||||||| || |||||    
T  11572080 cgggttcgaacccgggtcacgacgtctggccttacaatttctgcatttgttagttgagctaggacttctagac 11572008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 28323004 - 28322932
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| |||||||||||| | ||||||||||| ||||||||  ||||||||||||| || |||||    
T  28323004 cgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 28322932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 33621566 - 33621493
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  33621566 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 33621493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 21000764 - 21000692
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||||| |||||||||  | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  21000764 cgggttcgaacccaggtcatgacgtacggccttgcaatttcggcatttgccagttgagctaggacttctagac 21000692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 33704288 - 33704216
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  33704288 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33704216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 4464197 - 4464138
Alignment:
Q  5 ggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    ||||||||||| |||||||||||| | |||| |||||| ||||||||| |||||| ||||    
T  4464197 ggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgtcagttgaactag 4464138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 32354017 - 32354074
Alignment:
Q  24 acgtctgaccttacaattttggcatttgttagttgagctaggatttttagacagaaaa 81  Q
    ||||| ||||||  ||||||||||||||| | ||||| ||||||||||||||| ||||    
T  32354017 acgtccgacctttgaattttggcatttgtcaattgagttaggatttttagacaaaaaa 32354074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 25112303 - 25112381
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacagaaaa 81  Q
    ||||||||||||||| |||||||||| |||||| |||||| || |||||  ||||||||||||| || |||||| ||||    
T  25112303 cgggttcgaacccaggtcatgacgtccgaccttgcaatttcggtatttgccagttgagctaggacttctagacaaaaaa 25112381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10220526 - 10220603
Alignment:
Q  1 ttcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacaga 78  Q
    ||||| ||||||||||||||||||||||   ||||||||||||||| ||||  ||||||| ||||| || ||||||||    
T  10220526 ttcggattcgaacccagatcatgacgtcctgccttacaattttggcttttgccagttgagttaggacttctagacaga 10220603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 11355895 - 11355834
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    |||||||||| ||||||||| ||||| |||||| |||||| |||||||||||||||| ||||    
T  11355895 cgggttcgaatccagatcataacgtccgaccttgcaatttcggcatttgttagttgaactag 11355834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 29484811 - 29484874
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    ||||||| |||||||||||||||||| | |||| |||||| ||||||||  |||||||||||||    
T  29484811 cgggttcaaacccagatcatgacgtccggccttgcaatttcggcatttgccagttgagctagga 29484874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 29499345 - 29499392
Alignment:
Q  92 tgagaagatgatacaaggttatagatatgtatagtaattatcgttagt 139  Q
    ||||||||||||||||||||||||||||||||||| | |||| |||||    
T  29499345 tgagaagatgatacaaggttatagatatgtatagttactatcattagt 29499392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 47961011 - 47961068
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgag 60  Q
    ||||||||||||| | |||||||||||||||||  ||||||||||||||  |||||||    
T  47961011 cgggttcgaacccggttcatgacgtctgaccttgtaattttggcatttgcaagttgag 47961068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 29255788 - 29255728
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    |||||||||||| ||||| ||||||  ||||| |||||||||||||||  |||||||||||    
T  29255788 gggttcgaacccggatcacgacgtccaaccttgcaattttggcatttgccagttgagctag 29255728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 48444209 - 48444281
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    |||||||||||||||||| ||||||    |||||||||| ||||||| | ||||||||||||| || ||||||    
T  48444209 gggttcgaacccagatcacgacgtccagtcttacaatttcggcatttttcagttgagctaggacttctagaca 48444281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 40643047 - 40642972
Alignment:
Q  2 tcgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacag 77  Q
    ||||||| |||||| |||||  | ||||| ||||||||||| | ||||||| |||||||||| ||||| |||||||    
T  40643047 tcgggtttgaacccggatcacaatgtctggccttacaatttcgacatttgtcagttgagctaagatttctagacag 40642972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 7162847 - 7162916
Alignment:
Q  6 gttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||| | |||  ||||| | ||||||||||| ||||||||  ||||||||||||| ||||||||    
T  7162847 gttcgaacccgggtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttttagac 7162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 31770588 - 31770661
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | ||||||| || | |||| |||||| ||||||||  ||||||||||||| || ||||||    
T  31770588 cgggttcgaacccgggtcatgacatccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 31770661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 44084012 - 44083939
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| | |||  ||||| | |||| |||||||||||||||  ||||||||||||| || ||||||    
T  44084012 cgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagaca 44083939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 47250309 - 47250370
Alignment:
Q  5 ggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctagga 66  Q
    ||||||||||| | |||||||||| | |||| |||||| ||||||||  |||||||||||||    
T  47250309 ggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctagga 47250370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 4106810 - 4106738
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||| ||||||| || |||||    
T  4106810 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgggctaggacttctagac 4106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 4925661 - 4925586
Alignment:
Q  5 ggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacagaaa 80  Q
    ||||||||| | | |||||||||||||||||||||||| ||||||| | ||||||  ||||| |||||||| ||||    
T  4925661 ggttcgaacgcgggtcatgacgtctgaccttacaatttcggcatttatgagttgaattaggacttttagacggaaa 4925586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 9577018 - 9577089
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||||||| |||||||||||| |||| ||||||  |||||||  ||||||||||||| || |||||    
T  9577018 gggttcgaacccaggtcatgacgtctggccttgcaatttcagcatttgccagttgagctaggacttctagac 9577089  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 12257427 - 12257356
Alignment:
Q  4 gggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    |||||||||||||| |||  ||||||| ||||||||||| ||||||||  ||||||||||||| || |||||    
T  12257427 gggttcgaacccaggtcacaacgtctggccttacaatttcggcatttgccagttgagctaggacttctagac 12257356  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 35317753 - 35317827
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacag 77  Q
    ||||||||| ||||| |||| ||||| |||||| |||||| ||||||||  ||||||||||||| || |||||||    
T  35317753 cgggttcgaccccaggtcataacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagacag 35317827  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 2971054 - 2970982
Alignment:
Q  5 ggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagacag 77  Q
    ||||||||||| | |||  ||||||||||||||||||| | ||||| | ||||||||||||| || |||||||    
T  2971054 ggttcgaacccgggtcacaacgtctgaccttacaatttcgacatttatcagttgagctaggacttctagacag 2970982  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 1191596 - 1191669
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| ||||| |||||| | |||| |||||| | ||||||  ||||||||||||| || ||||||    
T  1191596 cgggttcgaacccggatcacgacgtccggccttgcaatttcgtcatttgccagttgagctaggacttctagaca 1191669  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 3386956 - 3387029
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagaca 76  Q
    ||||||||||||| ||| | |||||| | |||| |||||| ||||||||  |||||| |||||| |||||||||    
T  3386956 cgggttcgaacccggataacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttttagaca 3387029  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 6670361 - 6670406
Alignment:
Q  18 atcatgacgtctgaccttacaattttggcatttgttagttgagcta 63  Q
    ||||||||||| ||||||| ||||| ||||||||| ||||||||||    
T  6670361 atcatgacgtccgaccttataatttcggcatttgtcagttgagcta 6670406  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 13204029 - 13203957
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | ||| |||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  13204029 cgggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 13203957  T

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Target: scaffold1348 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 918 - 990
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||||||||| | |||| |||||| ||||||||  ||||||||||||| || |||||    
T  918 cgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 990  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 22235 - 22174
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctag 64  Q
    |||| |||||||| | ||| |||||| | ||||||||||| ||||||||| |||||||||||    
T  22235 cgggctcgaacccgggtcacgacgtccggccttacaatttcggcatttgtcagttgagctag 22174  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 56553 - 56481
Alignment:
Q  3 cgggttcgaacccagatcatgacgtctgaccttacaattttggcatttgttagttgagctaggatttttagac 75  Q
    ||||||||||||| | |||  ||||| |||||| |||||| ||||||||  ||||||||||||| || |||||    
T  56553 cgggttcgaacccgggtcacaacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 56481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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