View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18737_low_5 (Length: 666)
Name: NF18737_low_5
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_5 |
 | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 10 - 651
Target Start/End: Original strand, 31159340 - 31159992
Alignment:
| Q |
10 |
acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31159340 |
acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccg |
31159439 |
T |
|
| Q |
110 |
atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaaagtcaccaaataacaacaaatcattacattaagaa |
209 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31159440 |
atatattcgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaaagtcaccaaataacaacaaatcattacattaagaa |
31159539 |
T |
|
| Q |
210 |
attaaaacaaaaagcatgtgagcaggcgaagacaacacaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31159540 |
attaaaacaaaaagcatgtgagcaggcgaagacaacaaaactttatttctccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaa |
31159639 |
T |
|
| Q |
310 |
aacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaattgcttacttatgacgcatatccca |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
31159640 |
aacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcatatgtaaaaccatcaatccgtagaaaatttcttacttatgatgcatatccca |
31159739 |
T |
|
| Q |
410 |
accagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctcca |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31159740 |
accagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatctttcttcgtgtttggcaagggcttctcca |
31159839 |
T |
|
| Q |
510 |
taacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttcca-----------gcagtgaaggatgtattcca |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31159840 |
taacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaacacgagttccagaaacttgactgcagtgaaggatgtattcca |
31159939 |
T |
|
| Q |
599 |
actctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaata |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31159940 |
actctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaata |
31159992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 259 - 640
Target Start/End: Complemental strand, 31489371 - 31488973
Alignment:
| Q |
259 |
tccttttagagaattgttgttctcaactatagtttgaaaagggaaagtgaaaacaaatatatattgttaaatttaattgtcaaacccttaaaatttgcat |
358 |
Q |
| |
|
||||| ||||||| |||||| || |||| ||||||||||||||||||||||| |||||||| || || |||||||||||||||| ||||||||||||| | |
|
|
| T |
31489371 |
tccttgtagagaactgttgtgctaaactttagtttgaaaagggaaagtgaaatcaaatatacatggtaaaatttaattgtcaaagccttaaaatttgctt |
31489272 |
T |
|
| Q |
359 |
atg------taaaaccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctt |
452 |
Q |
| |
|
||| |||||| |||||| ||||| ||||||||||||| ||| | |||||| || |||| ||| | |||||||| ||| | ||||||||||| |
|
|
| T |
31489271 |
atggaaaagtaaaacaatcaattaatagaagattgcttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctt |
31489172 |
T |
|
| Q |
453 |
tgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcat |
552 |
Q |
| |
|
||||||| | || |||||||||||| ||| ||| ||||||| || |||||| || ||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31489171 |
tgtaccacatgagagtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcat |
31489072 |
T |
|
| Q |
553 |
agaaactagggagaacacgagttcca-----------gcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgaga |
640 |
Q |
| |
|
| ||| ||| |||||||| ||||| | ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
31489071 |
aaaaaacaggaagaacacgtcttccaaaaacttgactgtagtgaaggatgtattccaattctcgcaagcaccaagttgaggaagcatagtttttggaga |
31488973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 31019891 - 31020112
Alignment:
| Q |
10 |
acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| || ||| || ||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
31019891 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
31019990 |
T |
|
| Q |
110 |
atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaa-aagtcaccaaataacaacaaatcattacattaag- |
207 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| || ||| | ||||||| ||||||||| ||||| |
|
|
| T |
31019991 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattac-ttaaga |
31020089 |
T |
|
| Q |
208 |
aaattaaaacaaaaagcatgtga |
230 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31020090 |
aaattaaaacaaaaagcatgtga |
31020112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 31029772 - 31029993
Alignment:
| Q |
10 |
acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||| || ||| || ||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
31029772 |
acatcatcaaccgagtccaaaagtaatagatttactactttttctatatgaggattcataccaactagttcttttggaagagatgaaaagttgtgaccca |
31029871 |
T |
|
| Q |
110 |
atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaa-aagtcaccaaataacaacaaatcattacattaag- |
207 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| || ||| | ||||||| ||||||||| ||||| |
|
|
| T |
31029872 |
atatattcaatatctcttcaacaatctttttaatctcagcatattgaggcctaaaagtttaaaagaaatcaaccaataacactgaatcattac-ttaaga |
31029970 |
T |
|
| Q |
208 |
aaattaaaacaaaaagcatgtga |
230 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31029971 |
aaattaaaacaaaaagcatgtga |
31029993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 31489655 - 31489435
Alignment:
| Q |
10 |
acatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgaccca |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||| || |||| || ||||||| ||||||||||||| ||||| | |||||||||| |
|
|
| T |
31489655 |
acatcatcaatggagtccaaaagtaatagatttgctactttatctatatgagaattcataccaactagttcttttggaagagatgaataattgtgaccca |
31489556 |
T |
|
| Q |
110 |
atatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtt-ttaaaaagtcaccaaataacaacaaatcattacattaaga |
208 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||||| | ||||||| |||||||||| |||| |
|
|
| T |
31489555 |
atatattcaatatctcgtcaacaatctttttaatctcttcatattgaggcctgaaagttaagaaaaagtcaaccaataacacttaatcattaca-taagg |
31489457 |
T |
|
| Q |
209 |
aattaaaacaaaaagcatgtga |
230 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
31489456 |
aattaaaacaaaaagaatgtga |
31489435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 324 - 640
Target Start/End: Original strand, 31030127 - 31030460
Alignment:
| Q |
324 |
gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa------ccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagaga |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||| | |||||| ||||| ||||||||||||| ||| | |||||| ||||||| |
|
|
| T |
31030127 |
gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaagtaaaacaatcaattaatagaatattgcttacttatcacgaagatcccagccagaga |
31030226 |
T |
|
| Q |
418 |
gattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttcc |
517 |
Q |
| |
|
||| | |||||||| ||| | ||||||| |||||||||| | ||||||||||||||| ||| ||| ||||||| || |||||| || ||| |||| |
|
|
| T |
31030227 |
tattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcc |
31030326 |
T |
|
| Q |
518 |
attttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttcca-----------gcagtgaaggatgtattccaactctcgc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||| ||||| |||||||| | |||| |||||| |
|
|
| T |
31030327 |
tttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgc |
31030426 |
T |
|
| Q |
607 |
aagcaccatgttgaggaagcatagttttttgaga |
640 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| |
|
|
| T |
31030427 |
aagcaccaagttgaggaagcatagtttttggaga |
31030460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 324 - 640
Target Start/End: Original strand, 31020246 - 31020579
Alignment:
| Q |
324 |
gttaaatttaattgtcaaacccttaaaatttgcatatgtaaaa------ccatcaatccgtagaaaattgcttacttatgacgcatatcccaaccagaga |
417 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||| | |||||| ||||| ||||||||||||| ||| | |||||| ||||||| |
|
|
| T |
31020246 |
gttaaatttaattgtcaaagccttaaaatctgcttatgtaaaagtaaaacaatcaattaatagaatattgcttacttatcacgaagatcccagccagaga |
31020345 |
T |
|
| Q |
418 |
gattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttcc |
517 |
Q |
| |
|
||| | |||||||| ||| | ||||||| |||||||||| | || |||||||||||| ||| ||| ||||||| || |||||| || ||| |||| |
|
|
| T |
31020346 |
tattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttcatgtttggaaaaggcttcaccgtaaattcc |
31020445 |
T |
|
| Q |
518 |
attttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttcca-----------gcagtgaaggatgtattccaactctcgc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||| ||||| |||||||| | |||| |||||| |
|
|
| T |
31020446 |
tttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgc |
31020545 |
T |
|
| Q |
607 |
aagcaccatgttgaggaagcatagttttttgaga |
640 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||| |
|
|
| T |
31020546 |
aagcaccaagttgaggaagaatagtttttggaga |
31020579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 388 - 557
Target Start/End: Original strand, 31162097 - 31162264
Alignment:
| Q |
388 |
cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc |
487 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||| || | ||||||||||||| |||||||| || || ||||||||| ||| ||| |
|
|
| T |
31162097 |
cttacttatgacgcacatcccaaccagag--attggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttggaatctttgttc |
31162194 |
T |
|
| Q |
488 |
gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa |
557 |
Q |
| |
|
|||||| || |||||| ||||| |||| ||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
31162195 |
atgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaa |
31162264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 643
Target Start/End: Original strand, 31528977 - 31529243
Alignment:
| Q |
388 |
cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc |
487 |
Q |
| |
|
||||||||| ||| ||||||||||| || |||||||||||||| || ||| || |||||||| ||| | | ||| | || |||| |||| |||| || |
|
|
| T |
31528977 |
cttacttatcacgtatatcccaacctgaaagattggcgacttgcgtgagagctgtcctccatccttgcaggacctcagtgtcttgtttgaatctttcctc |
31529076 |
T |
|
| Q |
488 |
gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaacacgagttccag-------- |
579 |
Q |
| |
|
|||| ||||| |||| | |||||| ||| |||| | || |||||| ||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
31529077 |
atgttgggcaaatgcttttttataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgt |
31529176 |
T |
|
| Q |
580 |
---cagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|| ||||||||||||| ||| || ||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
31529177 |
acgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaaga |
31529243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 557
Target Start/End: Complemental strand, 31496575 - 31496422
Alignment:
| Q |
404 |
atcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggct |
503 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| | ||||||||||||| ||||||| || || ||||||||| ||| ||| |||||| ||| ||| |
|
|
| T |
31496575 |
atcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttcatgtttgacaaatgct |
31496476 |
T |
|
| Q |
504 |
tctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa |
557 |
Q |
| |
|
|| |||||| ||||| |||| | || |||| |||||| ||||||||||||||| |
|
|
| T |
31496475 |
tcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaa |
31496422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 388 - 556
Target Start/End: Original strand, 31150820 - 31150988
Alignment:
| Q |
388 |
cttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttc |
487 |
Q |
| |
|
||||||||| ||| | |||||| |||||||||||||| |||||||| || | ||||||||||||| || || || | | ||||||||| ||||||| |
|
|
| T |
31150820 |
cttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttc |
31150919 |
T |
|
| Q |
488 |
gtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaa |
556 |
Q |
| |
|
||||| || | |||||| |||||| ||| ||||||| || |||||| || ||||||||||||||||| |
|
|
| T |
31150920 |
atgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaa |
31150988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 31034133 - 31034207
Alignment:
| Q |
70 |
ccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatc |
144 |
Q |
| |
|
|||||||| ||||||||||||| |||||| || ||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
31034133 |
ccaactaaatcttttggaagacttgaaaaccggtaacccaatctatttattatctcttcaacaatcttttcaatc |
31034207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 31150437 - 31150600
Alignment:
| Q |
8 |
ggacatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacc |
107 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||| ||| || | || |||| ||| || || ||||| | |||||||||| ||||| |||| ||| |
|
|
| T |
31150437 |
ggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcccgactaaattttttggaagattagaaaacttgtaacc |
31150536 |
T |
|
| Q |
108 |
caatatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagtttta |
171 |
Q |
| |
|
||| |||| | ||||||||||| ||||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
31150537 |
caacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagtttta |
31150600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 31528560 - 31528659
Alignment:
| Q |
70 |
ccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttt |
169 |
Q |
| |
|
|||||||| || |||||||| | |||||||||| | |||||||| | |||||||||||||||||||| ||||||||| | || ||||||||||||| |
|
|
| T |
31528560 |
ccaactaaatcatttggaaggcttgaaaatttgcaattcaatatatttactatctcttcaacaatctttttaatctctgctgactggggcctgaaagttt |
31528659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 31163374 - 31163416
Alignment:
| Q |
281 |
tcaactatagtttgaaaagggaaagtgaaaacaaatatatatt |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
31163374 |
tcaactatagtttgaaaagagaaagtgaaatcaaatatatatt |
31163416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 450
Target Start/End: Complemental strand, 31476650 - 31476589
Alignment:
| Q |
389 |
ttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatc |
450 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
31476650 |
ttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatc |
31476589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 557
Target Start/End: Complemental strand, 31501760 - 31501592
Alignment:
| Q |
389 |
ttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatttttcttcg |
488 |
Q |
| |
|
|||||||| ||| | ||| |||||||| ||| |||||||||||| ||| | ||||||||||| | ||||||| || || ||||||||| ||| ||| |
|
|
| T |
31501760 |
ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca |
31501661 |
T |
|
| Q |
489 |
tgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa |
557 |
Q |
| |
|
|||||| ||| ||||| | |||| | ||| |||| | || |||| | | ||||||||||||||||||| |
|
|
| T |
31501660 |
tgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaa |
31501592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 31034801 - 31034834
Alignment:
| Q |
384 |
attgcttacttatgacgcatatcccaaccagaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
31034801 |
attgcttacttatgacgcatatcccatccagaga |
31034834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 31482280 - 31482235
Alignment:
| Q |
584 |
gaaggatgtattccaactctcgcaagcaccatgttgaggaagcata |
629 |
Q |
| |
|
||||||||||| |||| || ||||||||||| |||||||||||||| |
|
|
| T |
31482280 |
gaaggatgtataccaattcacgcaagcaccaagttgaggaagcata |
31482235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 17438801 - 17438641
Alignment:
| Q |
14 |
catcaacggagtccaaaagtaatagatttgctactttttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccaatat |
113 |
Q |
| |
|
||||||| |||||||||||||| ||||| || | ||||||| || ||||||| |||||||| ||||||| | ||||||| ||||| ||||||| |
|
|
| T |
17438801 |
catcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcccaactaaatcttttgaattacatgaagatttgcattccaatat |
17438702 |
T |
|
| Q |
114 |
atgtgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttttaaaa |
174 |
Q |
| |
|
|| |||||| || ||||||||||| |||||||||| |||| ||||||||||||| |||| |
|
|
| T |
17438701 |
attcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagtttgaaaa |
17438641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 12781400 - 12781458
Alignment:
| Q |
583 |
tgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaa |
641 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| |
|
|
| T |
12781400 |
tgaaggatgtattccaattctcgcaaacaccaagttgaggaagcatagttcttagagaa |
12781458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 557
Target Start/End: Original strand, 33288074 - 33288189
Alignment:
| Q |
442 |
ccctccatctttgtaccatctctgattcatgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaagg |
541 |
Q |
| |
|
||||||||||| ||||||| || || ||||||||| ||| ||| ||| ||| || |||||| |||||| | ||| |||| | || |||||||||||| |
|
|
| T |
33288074 |
ccctccatcttgacaccatctgagagtcttgttggaatgtttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaagg |
33288173 |
T |
|
| Q |
542 |
atcaacatcatagaaa |
557 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33288174 |
atcaacatcatagaaa |
33288189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 12785590 - 12785648
Alignment:
| Q |
583 |
tgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaa |
641 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
12785590 |
tgaaggatgtattccaattctcgcaaacaccaagttgaagaagcatagttcttagagaa |
12785648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 567
Target Start/End: Original strand, 12786226 - 12786303
Alignment:
| Q |
490 |
gtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaa |
567 |
Q |
| |
|
|||||||||||| ||| ||||||| ||| |||| | || |||||||||||||||||||||||| ||| |||| |||| |
|
|
| T |
12786226 |
gtttggcaagggattcgccataaccaccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa |
12786303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 13608696 - 13608643
Alignment:
| Q |
401 |
catatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg |
454 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
13608696 |
catatcccaaccagagagattggctacttgtgttagggctcccctccatctttg |
13608643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 641
Target Start/End: Original strand, 33288248 - 33288284
Alignment:
| Q |
605 |
gcaagcaccatgttgaggaagcatagttttttgagaa |
641 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33288248 |
gcaagcaccatgttgaggaagcatagtttcttgagaa |
33288284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 569
Target Start/End: Complemental strand, 33642258 - 33642071
Alignment:
| Q |
382 |
aaattgcttacttatgacgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaattt |
481 |
Q |
| |
|
||||| ||||||||| ||| | |||||||||||||| | | | |||||| ||||| | ||||||||||| ||||| | | || ||||||||| | |
|
|
| T |
33642258 |
aaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatct |
33642159 |
T |
|
| Q |
482 |
ttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaactagggagaaca |
569 |
Q |
| |
|
|| ||| |||||| ||| ||||| | |||| ||||| |||| | || ||||||||||||||||||||||| ||| |||| |||||| |
|
|
| T |
33642158 |
ttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaaca |
33642071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 641
Target Start/End: Original strand, 12782147 - 12782209
Alignment:
| Q |
579 |
gcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaa |
641 |
Q |
| |
|
||||| |||||||||| | || |||||||| ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
12782147 |
gcagttaaggatgtatgctaattctcgcaaacaccaagttgaagaagcatagtttttagagaa |
12782209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33060083 - 33060169
Alignment:
| Q |
471 |
tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa |
557 |
Q |
| |
|
||||||||| ||| ||| |||||| ||| ||||| | |||| ||||| |||| | | |||||||||||||||||||||||||||| |
|
|
| T |
33060083 |
tgttggaatctttgttcatgtttgacaaaagcttcactataaattccactttgcttccgcacctcagaaggatcaacatcatagaaa |
33060169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 643
Target Start/End: Original strand, 33060228 - 33060266
Alignment:
| Q |
605 |
gcaagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
33060228 |
gcaagcaccacgttgaggaagcatagttctttgagaaga |
33060266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33265410 - 33265496
Alignment:
| Q |
471 |
tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa |
557 |
Q |
| |
|
||||||||| ||| ||| |||||| || |||||| |||||| | ||| |||| | |||||| ||||| |||||||||||||||||| |
|
|
| T |
33265410 |
tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa |
33265496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 557
Target Start/End: Original strand, 33274554 - 33274640
Alignment:
| Q |
471 |
tgttggaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa |
557 |
Q |
| |
|
||||||||| ||| ||| |||||| || |||||| |||||| | ||| |||| | |||||| ||||| |||||||||||||||||| |
|
|
| T |
33274554 |
tgttggaatctttgttcatgtttgataaaggcttcaccataaatcccactttgctttctcacatcagagggatcaacatcatagaaa |
33274640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 609 - 643
Target Start/End: Complemental strand, 33642020 - 33641986
Alignment:
| Q |
609 |
gcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33642020 |
gcaccatgttgaggaagcatagtttcttgagaaga |
33641986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 557
Target Start/End: Original strand, 9169391 - 9169472
Alignment:
| Q |
476 |
gaatttttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaa |
557 |
Q |
| |
|
|||| ||| ||| |||||||||| ||||| | |||| | ||| |||| | || |||||||||||||||||||||||||||| |
|
|
| T |
9169391 |
gaatctttgttcatgtttggcaaatgcttcacaataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaa |
9169472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 33402758 - 33402875
Alignment:
| Q |
51 |
ttctataggataatttattccaactaattcttttggaagacatgaaaatttgtgacccaatatatgtgttatctcttcaacaatcttttcaatctctgca |
150 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||||| || ||||||| ||||| ||||||||| |||||| || ||||||||||| ||||||| || |
|
|
| T |
33402758 |
ttctataggagaatcaatcccaactaaatcttttgaaacacatgaagatttgcactccaatatattcattatcttttgaacaatctttttaatctctcca |
33402857 |
T |
|
| Q |
151 |
tattgaggcctgaaagtt |
168 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
33402858 |
gcttgtggcctgaaagtt |
33402875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 607 - 651
Target Start/End: Complemental strand, 9781 - 9737
Alignment:
| Q |
607 |
aagcaccatgttgaggaagcatagttttttgagaagagtacaata |
651 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
9781 |
aagcaccattttgaggaagcatagttttctgagaagattacaata |
9737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 6472953 - 6473005
Alignment:
| Q |
402 |
atatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg |
454 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
6472953 |
atatcccaaccagagagattggctacttgtgttagggctcccctccatctttg |
6473005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 650
Target Start/End: Original strand, 6473158 - 6473212
Alignment:
| Q |
596 |
ccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaat |
650 |
Q |
| |
|
|||| ||| ||||||||||||| || |||||||||||||||||||| | |||||| |
|
|
| T |
6473158 |
ccaattcttgcaagcaccatgtggaagaagcatagttttttgagaaaattacaat |
6473212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23353881 - 23353918
Alignment:
| Q |
606 |
caagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23353881 |
caagcaccattttgaggaagcatagttttctgagaaga |
23353918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23406730 - 23406767
Alignment:
| Q |
606 |
caagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23406730 |
caagcaccattttgaggaagcatagttttctgagaaga |
23406767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23441861 - 23441898
Alignment:
| Q |
606 |
caagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23441861 |
caagcaccattttgaggaagcatagttttctgagaaga |
23441898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23449251 - 23449288
Alignment:
| Q |
606 |
caagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23449251 |
caagcaccattttgaggaagcatagttttctgagaaga |
23449288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23465384 - 23465421
Alignment:
| Q |
606 |
caagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23465384 |
caagcaccattttgaggaagcatagttttctgagaaga |
23465421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 23474393 - 23474430
Alignment:
| Q |
606 |
caagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
23474393 |
caagcaccattttgaggaagcatagttttctgagaaga |
23474430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 36025448 - 36025485
Alignment:
| Q |
606 |
caagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
36025448 |
caagcaccattttgaggaagcatagtcttttgagaaga |
36025485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 607 - 643
Target Start/End: Original strand, 13559 - 13595
Alignment:
| Q |
607 |
aagcaccatgttgaggaagcatagttttttgagaaga |
643 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
13559 |
aagcaccattttgaggaagcatagttttctgagaaga |
13595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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