View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_low_52 (Length: 215)

Name: NF18737_low_52
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_low_52
NF18737_low_52
[»] chr4 (1 HSPs)
chr4 (10-207)||(38116272-38116460)
[»] chr8 (2 HSPs)
chr8 (10-207)||(45113687-45113898)
chr8 (10-39)||(11288320-11288349)
[»] chr5 (1 HSPs)
chr5 (10-101)||(1015885-1015973)
[»] chr3 (2 HSPs)
chr3 (103-179)||(22776232-22776309)
chr3 (66-111)||(22776157-22776202)
[»] chr7 (1 HSPs)
chr7 (147-207)||(34351873-34351933)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 38116272 - 38116460
Alignment:
Q  10 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagcagtttctg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  38116272 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggct---------gagactgctgatgttagcagcagtttctg 38116362  T
Q  110 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38116363 tttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 38116460  T

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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 45113687 - 45113898
Alignment:
Q  10 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttag------------ 97  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||    |||||| |||||||||||||||||| ||||||                
T  45113687 atcatcatagttgaaaagggtaggagcaagtctttgagaaagatgtcagtggt---tgggctagttcggctgagactgctgctgttagtagctgctagct 45113783  T
Q  98 -------cagcagtttctgtttggttgtggcagctatggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttggatggttgttgt 190  Q
           |||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||| |  ||| |||||    
T  45113784 gcgtgtgcagctgtttctgtttggttgtggcagctagggtgtggccgatttaggtattggtttggaacaactgctggtgcatttttttg--ggtggttgt 45113881  T
Q  191 tgttggaattgatgatg 207  Q
    |||||||||||||||||    
T  45113882 tgttggaattgatgatg 45113898  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 11288320 - 11288349
Alignment:
Q  10 atcatcatagttgaaaagggtaggagcagg 39  Q
    ||||||||||||||||||||||||||||||    
T  11288320 atcatcatagttgaaaagggtaggagcagg 11288349  T

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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 1015885 - 1015973
Alignment:
Q  10 atcatcatagttgaaaagggtaggagcaggtctttgagaaagatgtcggtggcggctgggctggttcggctgagactgctgatgttagcagc 101  Q
    |||||||||  |||||||||||||||||||||||||||||| ||||| ||   ||||||||||||||||||||||||| || ||||||||||    
T  1015885 atcatcataactgaaaagggtaggagcaggtctttgagaaatatgtctgt---ggctgggctggttcggctgagactgttgctgttagcagc 1015973  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 22776232 - 22776309
Alignment:
Q  103 gtttctgtttggttgtggcagcta-tggtgtggccggtttaggtattggtttggagcaactgctggtgcgttttttgg 179  Q
    ||||||||||||||||||||||||  || || ||||||||| || |||||||||| || ||||||||| |||||||||    
T  22776232 gtttctgtttggttgtggcagctaggggcgttgccggtttacgttttggtttggaacagctgctggtgtgttttttgg 22776309  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 22776157 - 22776202
Alignment:
Q  66 tgggctggttcggctgagactgctgatgttagcagcagtttctgtt 111  Q
    |||||||||||||||||||||| || |||||||||| ||| |||||    
T  22776157 tgggctggttcggctgagactgttgctgttagcagctgttgctgtt 22776202  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 34351933 - 34351873
Alignment:
Q  147 ttggtttggagcaactgctggtgcgttttttggatggttgttgttgttggaattgatgatg 207  Q
    ||||| |||||||| || ||||| | ||||||| ||||||||| |||||||||||||||||    
T  34351933 ttggtgtggagcaaatgttggtgtggtttttgggtggttgttgctgttggaattgatgatg 34351873  T

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