View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_7 (Length: 584)
Name: NF18737_low_7
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 138 - 421
Target Start/End: Original strand, 36810525 - 36810808
Alignment:
| Q |
138 |
gacagaagcagtgaatataggtgatgattacctgcacataaaattagggttgatgtgtcgctttctagctagggtaagacagaaaggataatgagagttt |
237 |
Q |
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| T |
36810525 |
gacagaagcagtgaatataggtgatgattacctgcacataaaattagggttgatgtgtcgctttctagctagggtaagacagaaaggataatgagagttt |
36810624 |
T |
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| Q |
238 |
gtttttcttgggattcaaaaaatgagtacccctttattcctgctaggaccctctgcataccctcttcaatttttatgtcataaattttgatgtcaggctc |
337 |
Q |
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| T |
36810625 |
gtttttcttgggattcaaaaaatgagtatccctttattcctgctaggaccctctgcataccctcttcaatttttatgtcataaattttgatgtcaggctc |
36810724 |
T |
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| Q |
338 |
taagctcttggcctactcatgctgacattcttgctaccaagctacagaaaataaaatactccctcccctctattaataactttt |
421 |
Q |
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| T |
36810725 |
taagctcttggcctactcatgctgacattcttgctaccaagctacagaaaataaaatactccctcccctctattaataactttt |
36810808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 36810397 - 36810473
Alignment:
| Q |
10 |
gaagaatattggaactatatatataatgaaaactcaagaagagtgtgaggaactcttgtgagccatatgagagatgt |
86 |
Q |
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| T |
36810397 |
gaagaatattggaactatatatataatgaaaactcaagaagattgtgaggaactcttgtgagccatatgagagatgt |
36810473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 450 - 567
Target Start/End: Original strand, 36811715 - 36811827
Alignment:
| Q |
450 |
gtgttactttcaaattttcaaattagtttgagctgannnnnnnnagcattattgtacatactaattatgtgtgtatttgactccacaatgataaaaaaga |
549 |
Q |
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| T |
36811715 |
gtgttactttcaaattttcaacttagtttgagctgattttttt-agcattat---acatactaattatgtgtgtatttgactccacaatgat-aaaaaga |
36811809 |
T |
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| Q |
550 |
ttgattttgagtaaattg |
567 |
Q |
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|||||||||||||||||| |
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| T |
36811810 |
ttgattttgagtaaattg |
36811827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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