View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18737_low_8 (Length: 555)

Name: NF18737_low_8
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18737_low_8
NF18737_low_8
[»] chr8 (3 HSPs)
chr8 (1-219)||(41311177-41311395)
chr8 (1-208)||(43164855-43165062)
chr8 (498-539)||(41311412-41311453)
[»] chr7 (8 HSPs)
chr7 (1-143)||(30165608-30165750)
chr7 (1-198)||(30125131-30125328)
chr7 (307-398)||(30131424-30131515)
chr7 (339-466)||(30125466-30125593)
chr7 (1-90)||(30120085-30120174)
chr7 (1-94)||(30131085-30131178)
chr7 (1-69)||(28181012-28181080)
chr7 (162-207)||(28180514-28180559)
[»] chr2 (2 HSPs)
chr2 (123-207)||(21430161-21430244)
chr2 (1-202)||(21426470-21426671)
[»] scaffold1051 (1 HSPs)
scaffold1051 (124-192)||(1971-2039)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 41311177 - 41311395
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41311177 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaaccagccaatgaatagaaccattcaagaacgacccaactctgggaccac 41311276  T
Q  101 cattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41311277 cattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattgaact 41311376  T
Q  201 agataccatgtatttttat 219  Q
    |||||||||||||||||||    
T  41311377 agataccatgtatttttat 41311395  T

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Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 43164855 - 43165062
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccac 100  Q
    |||||||||||| |||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||    
T  43164855 tcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaatagaaccattcaagaacgacccgactctgggagcac 43164954  T
Q  101 cattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaact 200  Q
    | | ||  ||| ||||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||    
T  43164955 cttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaact 43165054  T
Q  201 agatacca 208  Q
    ||||||||    
T  43165055 agatacca 43165062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 498 - 539
Target Start/End: Original strand, 41311412 - 41311453
Alignment:
Q  498 tagagcttcatgagcataagctttcttgaaaagataagtttt 539  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41311412 tagagcttcatgagcataagctttcttgaaaagataagtttt 41311453  T

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Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 30165750 - 30165608
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccac 100  Q
    |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  30165750 tcctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaatgaatagaaccattgaagaacgacccaactctgggaccac 30165651  T
Q  101 cattagagcttgcagtattcttataaggcaaatcagaatcaaa 143  Q
    | | ||||| |||||  ||| |||||||||||| |||||||||    
T  30165650 cttcagagcatgcagggttcctataaggcaaatgagaatcaaa 30165608  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30125131 - 30125328
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccac 100  Q
    ||||||||||||||||||| |||||||||| | |  |||| || || || || ||||||||||||||  |||||||||||| ||||||||||||| |  |    
T  30125131 tcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaaccagccaatgaatagtcccattcaagaacaacccaactctgggccatc 30125230  T
Q  101 cattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaa 198  Q
    | |||||||  ||||||||| |||||||||||| |||||||||||||||||  ||||| | |||| ||||||||| ||| ||||||||||||||||||    
T  30125231 cgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatttcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 398
Target Start/End: Original strand, 30131424 - 30131515
Alignment:
Q  307 ataggagacagaggtatttgcttgttgacacgagtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctaca 398  Q
    |||||||| ||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  30131424 ataggagagagaggtatttgtttattgacaccagtggatggattccataggtagaggcatttgtaaacgtccaataatagaaaccctctaca 30131515  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 30125466 - 30125593
Alignment:
Q  339 agtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctacacgaacctataatatcaatgcaggattggggaggcacaaaa 438  Q
    ||||||||||||||| ||||| |||||| ||| |||||||||||||||||| ||||||||||||||| |||| | |    | ||| || |||||| ||||    
T  30125466 agtggatggattccaaaggtagaggcatgtgttacagtccaataatagaaaccctctacacgaacctctaattttaggataagatcggtgaggcaaaaaa 30125565  T
Q  439 tcaaggcttagtgaatgataagcagaat 466  Q
     |||||  ||||||||||||||||||||    
T  30125566 ccaaggtgtagtgaatgataagcagaat 30125593  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30120085 - 30120174
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaact 90  Q
    |||||||||||||||||||||||||||| ||| |  |||| || || || || || |||||||||||  |||||||||||| ||||||||    
T  30120085 tcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaacccaact 30120174  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30131085 - 30131178
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgg 94  Q
    |||||||||| |||||| |||||||||||| ||   |||| || || ||||| ||||||||||||||  |||||||||||| |||| |||||||    
T  30131085 tcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaacccgactctgg 30131178  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28181012 - 28181080
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaa 69  Q
    ||||||||||||||||||||||||||| | ||||  |||| || || ||||| ||||||||||||||||    
T  28181012 tcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaatagaa 28181080  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  162 attacctctcaatgagaacatctccaagtcaattgaactagatacc 207  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
Q  123 ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc 207  Q
    ||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 21426671 - 21426470
Alignment:
Q  1 tcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacgacccaactctgggaccac 100  Q
    ||||||||||||| ||||||||||||||||   |  |||| |  || || || ||||||||||||||  ||||| ||||||||||| |||||||| | |     
T  21426671 tcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagccccatttaagaacgacccgactctgggccgaa 21426572  T
Q  101 cattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaact 200  Q
      | | ||    ||||| |  |||||||||||| |||| ||| ||||||||||| ||||| || | ||||||||||||| |||| |||||||||||||||    
T  21426571 attcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaact 21426472  T
Q  201 ag 202  Q
    ||    
T  21426471 ag 21426470  T

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Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 1971 - 2039
Alignment:
Q  124 taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca 192  Q
    |||||||||  |||| ||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca 2039  T

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