View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18737_low_9 (Length: 539)
Name: NF18737_low_9
Description: NF18737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18737_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 32855684 - 32855953
Alignment:
| Q |
19 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctgct |
118 |
Q |
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| T |
32855684 |
gtggaatccggggcgtgtctggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaatcaagagaagagttaccctgct |
32855783 |
T |
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| Q |
119 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
218 |
Q |
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| T |
32855784 |
ctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaatgc |
32855883 |
T |
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| Q |
219 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
288 |
Q |
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| T |
32855884 |
aacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
32855953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 322 - 522
Target Start/End: Original strand, 32855987 - 32856187
Alignment:
| Q |
322 |
ccctttgaactaagataatatctccagctggaagnnnnnnnnnnnnnnnntatcttcaaagcactgtaactgttctgcactctgtggctactaccatcac |
421 |
Q |
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| T |
32855987 |
ccctttgaactaagataatatctccagctggaagaaaaacaaaaagaaaatatcttcaaagcactgtaactgttctgcactctgtggctactaccgtcac |
32856086 |
T |
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| Q |
422 |
ccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattt |
521 |
Q |
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| T |
32856087 |
ccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttctaatctaacattt |
32856186 |
T |
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| Q |
522 |
t |
522 |
Q |
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| T |
32856187 |
t |
32856187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 32850285 - 32850489
Alignment:
| Q |
38 |
tggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctg--------ctctacatgctca |
129 |
Q |
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| T |
32850285 |
tggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaattgagagaagagttaccctgctctacgcctctacatgctca |
32850384 |
T |
|
| Q |
130 |
aatcatcattagtcattctgatac--------------tcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaa |
215 |
Q |
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| T |
32850385 |
a---atcattagtcatgctgatacaactttagggattatcaggtcctttccagctgaaaataccaactgctacctgttggggttgctaaaagttactaag |
32850481 |
T |
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| Q |
216 |
tgcaacaa |
223 |
Q |
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|||||||| |
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| T |
32850482 |
tgcaacaa |
32850489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 511
Target Start/End: Original strand, 32850670 - 32850766
Alignment:
| Q |
410 |
tactaccatcacccaataaatcatctctctttggaaagaaatcacactttaatttctgcacaatttatgtagaaacagatacactttttaatctatttct |
509 |
Q |
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| T |
32850670 |
tactaccgtcacctagtaaatcatctatctttgcaaggtaatcacacttc-----ctgcacaatttatgcagaaacagctacactttttcatctatttct |
32850764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 32850520 - 32850561
Alignment:
| Q |
246 |
gtgcaagaccacatctcccacgcttgtagttttatttttccc |
287 |
Q |
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| T |
32850520 |
gtgcaagaccccatctcccacgattgtagttttatttttccc |
32850561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 32850592 - 32850625
Alignment:
| Q |
322 |
ccctttgaactaagataatatctccagctggaag |
355 |
Q |
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| T |
32850592 |
ccctttgaactaagataatatctccagctggaag |
32850625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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