View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18738_high_14 (Length: 227)
Name: NF18738_high_14
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_high_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3913081 - 3912855
Alignment:
| Q |
1 |
aaagatctgtcaggatctcttccgagaatcggtaaacaaaaatttcaaaatcattgaactacgcttggaaaaactcacagaaattccaattgtttcagct |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3913081 |
aaagatctgtcaggatctattctgagaatcggtaaacaaaaatttcaaaatcattgaactacgcttggaaaaactcacagaaattccaattgtttcagct |
3912982 |
T |
|
| Q |
101 |
tagaaattgaaaatggtatatccccccgaatttcgttaaacgaaaagtccctgagaacacaatgaaacagtcaagttcttaaatcactatgaggtctaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3912981 |
tagaaattgaaaatggtatatccccccgaatttcgttaaacgaaaagtccctgagaacacaatgaaacagccaagttcttaaatcactatgaggtctaag |
3912882 |
T |
|
| Q |
201 |
tacaaactgaattcagttcttctagtt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3912881 |
tacaaactgaattcagttcttctagtt |
3912855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University