View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18738_high_3 (Length: 367)
Name: NF18738_high_3
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 25797871 - 25797622
Alignment:
| Q |
12 |
atgaatagcaaagaagatttctttgtggctcttatttccactgctgtttcaatggttggatcaaatgcatcatttggatttttagttggaatgattgttt |
111 |
Q |
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| T |
25797871 |
atgaatagcaaagaagatttctttgtggctcttatttccactgctgtttcaatggttggatcaaatgcatcatttggatttttagttggaatgattgttt |
25797772 |
T |
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| Q |
112 |
atataatatttaagctaaggagttccacaaaggatgaaccattttctaccatttggaatcagaaaagcctcatctaaatttgaagagaaatcaattagta |
211 |
Q |
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| T |
25797771 |
atataatatttaagctaaggagttccacaaaggatgaaccattttctaccatttggaatcagaaaagcctcatctaaatttgaagagaaatcaattagta |
25797672 |
T |
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| Q |
212 |
tgtttttagtgcaaatgagttagtgtgaagggatttcaaaaatatggcaa |
261 |
Q |
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| T |
25797671 |
tgtttttagtgcaaatgagttagtgtgaagggatttcaaaaatatggcaa |
25797622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 1808341 - 1808528
Alignment:
| Q |
12 |
atgaatagcaaagaagatttctttgtggctcttatttccactgctgtttcaatggttggatcaaatgcatcatttggatttttagttggaatgattgttt |
111 |
Q |
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| T |
1808341 |
atgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttcattggttggatcaagtgctgctcttggatttttggttggaatgattgttt |
1808440 |
T |
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| Q |
112 |
atataatatttaagctaaggagttccacaaaggatgaaccattttctaccatttggaatcagaaaagcctcatctaaatttgaagaga |
199 |
Q |
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| T |
1808441 |
atgtgttacttaagctaaggaattggagtaatgataaaccactttctaccatttggaaccagaaaagtccaaactaaatttgaagaga |
1808528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 1875945 - 1876042
Alignment:
| Q |
12 |
atgaatagcaaagaagatttctttgtggctcttatttccactgctgtttcaatggttggatcaaatgcatcatttggatttttagttggaatgattgt |
109 |
Q |
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||||||||||||||||||| ||||||||| ||||||| ||||||||||||| |||| ||||||| |||| || | |||||||| |||||||||||||| |
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| T |
1875945 |
atgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattggtgggatcaagtgcagcactaggatttttggttggaatgattgt |
1876042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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