View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18738_high_4 (Length: 361)
Name: NF18738_high_4
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 5178448 - 5178790
Alignment:
| Q |
1 |
ataaaagaggaaataatagttgctttaattcttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatat |
100 |
Q |
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| T |
5178448 |
ataaaagaggaaataatagttgctttaatttttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatat |
5178547 |
T |
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| Q |
101 |
ctacctgtccacctatgtctgataaaccaacattcattataaatcaagcaacaaaaaactcgaaagaagatgaacagttttaaattgtagtctgcaatat |
200 |
Q |
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| T |
5178548 |
ctacctgtccacctatgtctgataaaccaacattcattataaatcaagcaacaaaaaactcgaaagaagatgaacagttttaaattgtagtccgcaatat |
5178647 |
T |
|
| Q |
201 |
aaaggattttaaggtctgcgatctgcgtcataactgcaaattcgattgtatcgagtaaannnnnnnacaatataaaggtttatagaatatactcaactgc |
300 |
Q |
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| T |
5178648 |
aaaggattttaaggtctgcgatctgcgtcataactgcaaattcgattgtatcgagtaaatttttttacaatataaaggtttatagaatatactcaactgc |
5178747 |
T |
|
| Q |
301 |
aatttaaaatcgtgacataaatctatcgaagtcgcgaacatgg |
343 |
Q |
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| T |
5178748 |
aatttaaaatcgtgacataaatctgtcgaagtcgcgaacatgg |
5178790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 13683499 - 13683566
Alignment:
| Q |
50 |
ctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
117 |
Q |
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| T |
13683499 |
ctagcttgaccttctcttctacagctgttatcccatagatgggcttcatatcttcctgtccatctatg |
13683566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 40189561 - 40189462
Alignment:
| Q |
28 |
attcttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatgtctgataaac |
127 |
Q |
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| T |
40189561 |
attcttaccttgtcttccttttctgctttggccttctttcttgcaactgttgtcccataaatgagcttcatatctcccagtccacctatgcctaataaac |
40189462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 28590727 - 28590767
Alignment:
| Q |
71 |
cagctgttatcccatagatgagcttcatatctacctgtcca |
111 |
Q |
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| T |
28590727 |
cagctgttatcccatagatgtgcttcaaatctacctgtcca |
28590767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 4847017 - 4847067
Alignment:
| Q |
74 |
ctgttatcccatagatgagcttcatatctacctgtccacctatgtctgata |
124 |
Q |
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| T |
4847017 |
ctgttatcccataaatgtgcttcatatctaccggtccatctatgcctgata |
4847067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 30619947 - 30620032
Alignment:
| Q |
32 |
ttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
117 |
Q |
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||||||||| ||||||| | || || |||||| || |||| || |||||||| || |||||||||||||| |||||||| ||||| |
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| T |
30619947 |
ttaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
30620032 |
T |
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