View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18738_low_1 (Length: 478)
Name: NF18738_low_1
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_low_1 |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 714507 - 714962
Alignment:
| Q |
16 |
ataataagtcgtaataaaacaactataaagggttcactgaatgactgactacccaagcaatgtctaactaataatcaaatactgacnnnnnnnncattcc |
115 |
Q |
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| T |
714507 |
ataataagtcgtaataaaacaactataaagggttcactgaatgactgactacccaaccaatgtctaactaataatcaaatactgacaaaaaaaacattcc |
714606 |
T |
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| Q |
116 |
aaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714607 |
aaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagc |
714706 |
T |
|
| Q |
216 |
taatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacccgtgcgtatgcgcacgggtactagacaagtactcatacaatcctataaagtt |
315 |
Q |
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| T |
714707 |
taatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacccgtgcgtatgcgcacgggtactagactagtactcatacaatcctataaagtt |
714806 |
T |
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| Q |
316 |
tctagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaa |
405 |
Q |
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| T |
714807 |
tctagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaa |
714906 |
T |
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| Q |
406 |
gagattctactcatcattttatatttacatcttgtatatcaaaaaaccaaattcct |
461 |
Q |
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| T |
714907 |
gagattctactcatcattttatatttacatcttgtatatcaaaaaaccaaattcct |
714962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 318 - 461
Target Start/End: Original strand, 752134 - 752287
Alignment:
| Q |
318 |
tagccaatgcatgaaagttgtctgtagacta----------agtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaaga |
407 |
Q |
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| T |
752134 |
tagccaatgcatgaaagttgtctgtagactatattattttgagtgacaatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaaga |
752233 |
T |
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| Q |
408 |
gattctactcatcattttatatttacatcttgtatatcaaaaaaccaaattcct |
461 |
Q |
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| T |
752234 |
gattctactcatcattttatatttacatcttgtatatcaaaaaaccaaattcct |
752287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 3765178 - 3765456
Alignment:
| Q |
16 |
ataataagtcgtaataaaacaactataaagggttcactgaatgactgactacccaagcaatgtctaactaataatcaaatactgacnnnnnnnn-----c |
110 |
Q |
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| T |
3765178 |
ataataagtcgtaataaaacagctataaggggttcactgaatgactgactacccaaccaatgtctaactaataattaaatactgacaaaaaaaaaaaaac |
3765277 |
T |
|
| Q |
111 |
attccaaacataaatggtcaatgtcaaactaatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgatcaattgtcttgggtaattt |
210 |
Q |
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|||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
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| T |
3765278 |
attccaaaaataaatgatcaatgtcaaactcatgcaatcatcgctttgacaccattttgtccttagcttatgtaatttgttctattgtcttgggtagttt |
3765377 |
T |
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| Q |
211 |
gaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacccgtgcgtatgcgcacgggtactagac |
289 |
Q |
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| T |
3765378 |
gaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccacccgtgcgtatgcgcacgggtactagac |
3765456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 165 - 461
Target Start/End: Original strand, 3932 - 4238
Alignment:
| Q |
165 |
ttttgtccttagcttatgtaatttgatcaattgtcttgggtaatttgaagctaatcatgtgttgatgtattgagttgtaaatcatcaacgatatccaccc |
264 |
Q |
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|||||||||| |||| ||| |||| ||| ||||||||||| ||||| |||| ||| ||||||| ||| ||| |||||||||| ||||| ||||||||| |
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| T |
3932 |
ttttgtccttcgcttctgtcctttgctcacttgtcttgggtcatttgcagctcatcctgtgttgctgtcttgcgttgtaaatcttcaactctatccaccc |
4031 |
T |
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| Q |
265 |
gtgcgtatgcgcacgggtactagacaagtactcatacaatcctataaagtttctagccaatgcatgaaagttgtctgtagacta----------agtgac |
354 |
Q |
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| T |
4032 |
gtgcgtctgcgcacgggttctctcctcgtcctcatccaatcctctcaagtttctagccaatgcatgaaagttgtctgtagactatattattttgagtgac |
4131 |
T |
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| Q |
355 |
aatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaaaaacca |
454 |
Q |
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| T |
4132 |
aatttacaacttataattttagtcactcaaaatcacgtcttagtttctaaagagattctactcatcattttatatttacatcttgtatatcaaaaaacca |
4231 |
T |
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| Q |
455 |
aattcct |
461 |
Q |
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||||||| |
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| T |
4232 |
aattcct |
4238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 801989 - 802050
Alignment:
| Q |
223 |
gtgttgatgtattgagttgtaaatcatcaacgatatccacccgtgcgtatgcgcacgggtac |
284 |
Q |
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| T |
801989 |
gtgttgatgtattgagttgtaaatcatcaacgatatccacccgtgcgtatgcgcacgggtac |
802050 |
T |
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Back To:
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