View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18738_low_10 (Length: 246)
Name: NF18738_low_10
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 53594918 - 53594708
Alignment:
| Q |
1 |
aacaatattgtcgaatttggcttataaacagcataaagtgggcagatacaagtgagacttacaccatgatattcaaaagatgaaataaacgttaaaagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53594918 |
aacaatattgtcgaatttggcttataaacagcataaagtgggcagatacaagtgagacttacaccatgatattcaaa--------------------gat |
53594839 |
T |
|
| Q |
101 |
tttataaaatattacaccatgattttataaaatattttatgtgcactttgaaactgcaataaattaacgtcaaaagatgaaaaacataaaacaaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
53594838 |
tttataaaatattacaccatgattttataaaatattttatgtgcactttgaaactgcaataaattaacgtcaaaagatgaaaaatataaaataaattaga |
53594739 |
T |
|
| Q |
201 |
tgactttttatactaaaccctatgcaatatt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
53594738 |
tgactttttatactaaaccctatgcaatatt |
53594708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 37982367 - 37982220
Alignment:
| Q |
84 |
aataaacgttaaaagattttataaaatattacaccatgattttataaaatattttatgtgcactttgaaactgcaataaattaacgtcaaaagatgaaaa |
183 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982367 |
aataaacgtcaaaagattttataaaatattacaccatgattttataaaatattttctgtgcactttgaaactgcaataaattaacgtcaaaagatgaaaa |
37982268 |
T |
|
| Q |
184 |
acataaaacaaattagatgactttttatactaaaccctatgcaatatt |
231 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982267 |
atataaaacaaattagatgactttttatactaaaccctatgcaatatt |
37982220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 37982395 - 37982362
Alignment:
| Q |
130 |
aaatattttatgtgcactttgaaactgcaataaa |
163 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
37982395 |
aaatattttctgtgcactttgaaactgcaataaa |
37982362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 37982419 - 37982391
Alignment:
| Q |
59 |
ttacaccatgatattcaaaagatgaaata |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37982419 |
ttacaccatgatattcaaaagatgaaata |
37982391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 9406009 - 9406072
Alignment:
| Q |
170 |
tcaaaagatgaaaaacataaaacaaattagatgac----tttttatactaaaccctatgcaatatt |
231 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
9406009 |
tcaaaagatgaaaaatataaaacaaaatagatgactagttttttatactaaacc--atgcaatatt |
9406072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 9424252 - 9424315
Alignment:
| Q |
170 |
tcaaaagatgaaaaacataaaacaaattagatgac----tttttatactaaaccctatgcaatatt |
231 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
9424252 |
tcaaaagatgaaaaatataaaacaaaatagatgactagttttttatactaaacc--atgcaatatt |
9424315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University