View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18738_low_14 (Length: 228)

Name: NF18738_low_14
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18738_low_14
NF18738_low_14
[»] chr6 (3 HSPs)
chr6 (89-217)||(17254044-17254172)
chr6 (89-137)||(17247140-17247188)
chr6 (134-174)||(17247197-17247237)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 17254044 - 17254172
Alignment:
Q  89 tagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttagtgacttgagcattctttaacttgtt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||    
T  17254044 tagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttagttactttagaattctttaacttgtt 17254143  T
Q  189 tctataatcttcatcgcttatattcttgg 217  Q
    |||||||||||||||||||||||| ||||    
T  17254144 tctataatcttcatcgcttatatttttgg 17254172  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 17247140 - 17247188
Alignment:
Q  89 tagaagtactcataataaccatgttattatccttgagagcactagaact 137  Q
    |||||||| ||||| |||||||||||| || ||||||||||||||||||    
T  17247140 tagaagtagtcatagtaaccatgttataatacttgagagcactagaact 17247188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 17247197 - 17247237
Alignment:
Q  134 aacttcttgtgacttgtcgcctagttttagtgacttgagca 174  Q
    |||||||| |||||||||  |||||||||||||||||||||    
T  17247197 aacttcttctgacttgtcctctagttttagtgacttgagca 17247237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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