View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18738_low_17 (Length: 219)

Name: NF18738_low_17
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18738_low_17
NF18738_low_17
[»] chr3 (29 HSPs)
chr3 (13-201)||(9838759-9838947)
chr3 (13-201)||(9849637-9849825)
chr3 (13-201)||(10663424-10663612)
chr3 (13-201)||(10031901-10032089)
chr3 (13-201)||(10126826-10127014)
chr3 (13-201)||(10184140-10184328)
chr3 (13-201)||(10580499-10580687)
chr3 (13-201)||(10260596-10260784)
chr3 (13-201)||(11769132-11769320)
chr3 (13-201)||(10434027-10434215)
chr3 (13-201)||(10375828-10376016)
chr3 (13-201)||(10088688-10088876)
chr3 (13-201)||(10195571-10195759)
chr3 (13-201)||(10363781-10363969)
chr3 (13-201)||(10077167-10077355)
chr3 (13-201)||(10889204-10889392)
chr3 (13-201)||(11131009-11131197)
chr3 (13-201)||(11160000-11160188)
chr3 (13-201)||(11148837-11149025)
chr3 (13-201)||(8861184-8861372)
chr3 (52-155)||(10527281-10527384)
chr3 (16-155)||(10517408-10517547)
chr3 (11-144)||(13160935-13161068)
chr3 (11-144)||(13170986-13171119)
chr3 (11-144)||(13332859-13332992)
chr3 (11-144)||(13344044-13344177)
chr3 (52-155)||(11782025-11782128)
chr3 (13-144)||(13289620-13289751)
chr3 (52-155)||(10500500-10500603)
[»] chr2 (1 HSPs)
chr2 (13-201)||(26906795-26906983)
[»] chr4 (1 HSPs)
chr4 (52-155)||(17852966-17853069)
[»] chr8 (1 HSPs)
chr8 (52-155)||(11484961-11485064)
[»] scaffold0002 (2 HSPs)
scaffold0002 (11-144)||(135869-136002)
scaffold0002 (11-144)||(145920-146053)
[»] chr6 (1 HSPs)
chr6 (52-142)||(31679755-31679845)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 9838947 - 9838759
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838947 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 9838848  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838847 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 9838759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 9849825 - 9849637
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849825 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 9849726  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849725 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 9849637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10663612 - 10663424
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10663612 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10663513  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  10663512 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctgtgatagcaacatgttcattattgtctcttt 10663424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10032089 - 10031901
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10032089 aatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10031990  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || |||||| || |||||||||||||||||||||||||||||    
T  10031989 aaacctcccatgcccaaaattgcaacaacacctatattattatgggatgcgtctctctgtgatagcaacatgttcattattgtctcttt 10031901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10127014 - 10126826
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  10127014 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttccc 10126915  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  10126914 aaacctcccatgcccaaaattgcaacaacacctatattattatgggatgtgtctctctgagatagcaacatgttcattattgtctcttt 10126826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10184328 - 10184140
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  10184328 aatatcaaaatcctcggacacacaagcccacgccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcct 10184229  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||| || || ||||||||||||||||||||||||||    
T  10184228 aaacctcccatgcccaaaattgcaacaacacctatagcattatgggttgtgtctctctgtgacagcaacatgttcattattgtctcttt 10184140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10580687 - 10580499
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10580687 aatatcaaaatcctcagacacacaaacccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10580588  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| || |||||||||||||||||||||||||||||    
T  10580587 aaacctcccatgcccaaaattgcaacaacacctatattattatggattgtgtttctctgtgatagcaacatgttcattattgtctcttt 10580499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10260784 - 10260596
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  10260784 aatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcct 10260685  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| || | |||||| ||||| || |||||||||||||||||||||||||||||    
T  10260684 aaacctcccatgcccaaaattgcaacaacacctatattattgttggttgtttctctctgtgatagcaacatgttcattattgtctcttt 10260596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 11769320 - 11769132
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  11769320 aatatcaaaatcctcagacacgcaagcccatgccttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaagggtagtttttcct 11769221  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||    
T  11769220 aaacctcccatgcccaaaattgcaacaacacctatattattatggattgtgtctctctgtgatagcaacatgttcattattgtctcttt 11769132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 10434027 - 10434215
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||| ||||||||||||||| ||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10434027 aatatcaaaatcctgagacacacaagcccaggccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10434126  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| || |||||||||||||||||||||||||||||    
T  10434127 aaacctcccatgcctaaaattgcaacaacacctatcttattatgagttgtgtttctctgtgatagcaacatgttcattattgtctcttt 10434215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 10375828 - 10376016
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  10375828 aatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaagggtagtttttcct 10375927  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||| | ||||||| | |  |||||||||||||||||||| || |||||    
T  10375928 aaacctcccatgcccaaaattgcaacaacacctatattattatgcgatgtgtctgtctctgatagcaacatgttcattatagtgtcttt 10376016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10088876 - 10088688
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||| |||| ||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10088876 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10088777  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||| ||||||||||||||||||||||| || | |||||| ||||| |  || ||||||||||||||||||||||||||    
T  10088776 aaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctcttt 10088688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10195759 - 10195571
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||| |||| ||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10195759 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10195660  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||| ||||||||||||||||||||||| || | |||||| ||||| |  || ||||||||||||||||||||||||||    
T  10195659 aaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctcttt 10195571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 10363781 - 10363969
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||||||| |||||| |||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10363781 aatatcaaaatcctcagagacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10363880  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||| ||||||||||||||||||||||| || | |||||| ||||| |  || ||||||||||||||||||||||||||    
T  10363881 aaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctcttt 10363969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10077355 - 10077167
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||||||||||||||||||| |||  || ||||||||| | | ||||||  | |||||||||||||||||||||||||||||||||||||    
T  10077355 aatatcaaaatcctcagacacacaagcccatgcctgcaaatcaaaatggtatcgaactttataatcattgtaaacaagttgggcaagggtagtttttcct 10077256  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||  | |  |    |||||||||||||||||||||||||||||    
T  10077255 aaacctcccatgcccaaaattgcaacaacacctatcttattatgggttccgcccatccctgatagcaacatgttcattattgtctcttt 10077167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 10889392 - 10889204
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||||||| ||||||||||| ||  | | |||||| || | |||||||| ||||||||||||||||||||| ||||| || ||||| ||     
T  10889392 aatatcaaaatcctcagatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccg 10889293  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    | ||||||||| || ||||||||||||||||| ||||||||||   | |||   || |  |||||||||||||||||||||||||||||    
T  10889292 acacctcccatacctaaaattgcaacaacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattattgtctcttt 10889204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 11131009 - 11131197
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||| || ||||||||||| ||  | | |||||| |||| |||||||| ||||||||||||| ||| ||| |||||||| ||||||||     
T  11131009 aatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccg 11131108  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    | ||||||||| || ||||||||||||||||| |||||||||| | | |||   || |  ||||||||||||||| |||||||||||||    
T  11131109 acacctcccatacctaaaattgcaacaacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattgtctcttt 11131197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 11160000 - 11160188
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||||||||||||||| ||||||||||| ||  | | ||||||||| | |||||||| ||||| ||||||||||||||| ||||| || ||||| ||     
T  11160000 aatatcaaaatcctcagatacacaagcccatgctttgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccg 11160099  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    | ||||||||| || |||||||||||||| ||||||||||||| |   |||   || |  |||||||||||||||||||||||||||||    
T  11160100 acacctcccatacctaaaattgcaacaacgcctatattgttattgccagtgctactctctgatagcaacatgttcattattgtctcttt 11160188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 11148837 - 11149025
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||| || ||||||||||| ||  | | |||||| |||| |||||||| ||||||||||||| ||| ||| |||||||| ||||||||     
T  11148837 aatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccg 11148936  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    | ||||||||| || ||||||||||||||||| |||||||||| | | |||   || |  ||||||||||||||| ||||| |||||||    
T  11148937 acacctcccatacctaaaattgcaacaacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattatctcttt 11149025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 8861372 - 8861184
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||| || ||||||||||| ||  | | |||||| || | |||||||| ||||||||||||||||||||| ||||| || ||||| ||     
T  8861372 aatatcaaaatcctctgatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccg 8861273  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    | ||||||||| || ||||||||||||||||| ||||||||||   | |||   || |  ||||||||||||||||||| |||||||||    
T  8861272 acacctcccatacctaaaattgcaacaacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattactgtctcttt 8861184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 10527384 - 10527281
Alignment:
Q  52 atcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattg 151  Q
    ||||||||| |||| ||| | ||||||||||||||||||||| |||||||| ||||| || | ||||||||| ||||| |||||||||||||||| |||     
T  10527384 atcaaaatggtgttcaaccttttcatcattgtaaacaagttgtgcaagggttgttttaccgacacctcccatacccaagattgcaacaacacctaaatta 10527285  T
Q  152 ttat 155  Q
    ||||    
T  10527284 ttat 10527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 10517547 - 10517408
Alignment:
Q  16 atcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaa 115  Q
    ||||||||||||||| |||||| |||| ||  | | |||||||||||||| ||||| | |||||||||||||||  || |||||||| ||||| || |      
T  10517547 atcaaaatcctcagatacacaaacccaggctttgaaatcaaaatgttgttcaacttttgcatcattgtaaacaaactgtgcaagggtcgttttaccgacg 10517448  T
Q  116 cctcccatgcccaaaattgcaacaacacctatattgttat 155  Q
    |||||||| |||| ||||||| ||||||||| ||| ||||    
T  10517447 cctcccatacccacaattgcagcaacacctaaattattat 10517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 13161068 - 13160935
Alignment:
Q  11 agaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttc 110  Q
    |||||||| |||||||| || |||||| ||||  |  ||| ||||||||| | ||||||||||| |||||| |||| |||||||||||| || ||||| |    
T  13161068 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13160969  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacc 144  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13160968 caacaccgcccatacccaaaattgcaaccacacc 13160935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 13171119 - 13170986
Alignment:
Q  11 agaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttc 110  Q
    |||||||| |||||||| || |||||| ||||  |  ||| ||||||||| | ||||||||||| |||||| |||| |||||||||||| || ||||| |    
T  13171119 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13171020  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacc 144  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13171019 caacaccgcccatacccaaaattgcaaccacacc 13170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 13332992 - 13332859
Alignment:
Q  11 agaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttc 110  Q
    |||||||| |||||||| || |||||| ||||  |  ||| ||||||||| | ||||||||||| |||||| |||| |||||||||||| || ||||| |    
T  13332992 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13332893  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacc 144  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13332892 caacaccgcccatacccaaaattgcaaccacacc 13332859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 13344177 - 13344044
Alignment:
Q  11 agaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttc 110  Q
    |||||||| |||||||| || |||||| ||||  |  ||| ||||||||| | ||||||||||| |||||| |||| |||||||||||| || ||||| |    
T  13344177 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 13344078  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacc 144  Q
    | | ||| ||||| |||||||||||||| |||||    
T  13344077 caacaccgcccatacccaaaattgcaaccacacc 13344044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 11782025 - 11782128
Alignment:
Q  52 atcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattg 151  Q
    |||||||||||||| |||||   |||||||||||||||| || |||||||| ||||| || |  |||||||| ||||||||||| |||||||||| |||     
T  11782025 atcaaaatgttgttcaactttcacatcattgtaaacaagctgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcgacaacacctaaatta 11782124  T
Q  152 ttat 155  Q
    ||||    
T  11782125 ttat 11782128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 13289751 - 13289620
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    |||||| |||||||| || |||||| ||||  |  ||| ||||||||| | ||||||||||| |||||| |||| |||||||||||| || ||||| ||     
T  13289751 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 13289652  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| ||||||||||| || |||||    
T  13289651 acaccgcccatacccaaaattgcgaccacacc 13289620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 10500603 - 10500500
Alignment:
Q  52 atcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattg 151  Q
    ||||||||||| || || ||  || || |||||||||||||| ||||| || ||||| || |  |||||||| |||||||||||||||||||||| |||     
T  10500603 atcaaaatgttcttcaattttatcgtcgttgtaaacaagttgagcaagtgttgttttaccgacgcctcccatacccaaaattgcaacaacacctaaatta 10500504  T
Q  152 ttat 155  Q
    ||||    
T  10500503 ttat 10500500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 26906983 - 26906795
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 112  Q
    ||||||||||||||||||||||||| |||| ||| ||| |||||||||  |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  26906983 aatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaagggtagtttttcct 26906884  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||| |||||||||||||||||    
T  26906883 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctctgatagcaacatattcattattgtctcttt 26906795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 17852966 - 17853069
Alignment:
Q  52 atcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattg 151  Q
    ||||||||| |||| ||| | |||||||||||||||||| || |||||||| ||||| || | ||||||||| ||||| |||||||||||||||| ||||    
T  17852966 atcaaaatgatgttcaaccttttcatcattgtaaacaagctgtgcaagggtcgttttaccgacacctcccatccccaatattgcaacaacacctaaattg 17853065  T
Q  152 ttat 155  Q
    ||||    
T  17853066 ttat 17853069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 11485064 - 11484961
Alignment:
Q  52 atcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattg 151  Q
    ||||||||| |||| ||||| |||||| |||||||||||||| |||||||| ||||| || |  ||||||||  ||||||||||||||||||||| |||     
T  11485064 atcaaaatgctgttcaactttttcatcgttgtaaacaagttgtgcaagggtcgttttaccgacgcctcccataaccaaaattgcaacaacacctaaatta 11484965  T
Q  152 ttat 155  Q
    ||||    
T  11484964 ttat 11484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 135869 - 136002
Alignment:
Q  11 agaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttc 110  Q
    |||||||| |||||||| || |||||| ||||  |  ||| ||||||||| | ||||||||||| |||||| |||| |||||||||||| || ||||| |    
T  135869 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 135968  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacc 144  Q
    | | ||| ||||| |||||||||||||| |||||    
T  135969 caacaccgcccatacccaaaattgcaaccacacc 136002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 145920 - 146053
Alignment:
Q  11 agaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttc 110  Q
    |||||||| |||||||| || |||||| ||||  |  ||| ||||||||| | ||||||||||| |||||| |||| |||||||||||| || ||||| |    
T  145920 agaatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgc 146019  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacc 144  Q
    | | ||| ||||| |||||||||||||| |||||    
T  146020 caacaccgcccatacccaaaattgcaaccacacc 146053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 31679755 - 31679845
Alignment:
Q  52 atcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaaca 142  Q
    ||||||| ||| |||||| |||| ||||||||||| |||||| || ||||  ||||| || | |||||||||||| ||||||| |||||||    
T  31679755 atcaaaacgttcttgaacatctttatcattgtaaagaagttgagctagggctgttttaccgacacctcccatgccgaaaattgaaacaaca 31679845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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