View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18738_low_18 (Length: 215)
Name: NF18738_low_18
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 47674102 - 47674295
Alignment:
| Q |
1 |
aatagaaaatgatgctggactatatttcattttatacggattatcctctaatattaaaaggtttagtcctacttgctccattccaaattagcagttgttt |
100 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47674102 |
aatagaaaatgatgctggaatatagttcattttatacggattatac-------------ggattagtcctacttgctccattccaaattagcagttgttt |
47674188 |
T |
|
| Q |
101 |
aagattgctatgcaaatattaagaaaaataataataaatttgctaatggacatggtagttttactaaattaaccctattcgttaataaatgcatgcttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47674189 |
aagattgctatgcaaatattaagaaaagtaataataaatttgctaatggacatggtagttttactaaattaaccctattcgttaataaatgcatgcttga |
47674288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University