View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18738_low_19 (Length: 202)
Name: NF18738_low_19
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 3679119 - 3678955
Alignment:
| Q |
14 |
aatatactaaatgagacgcattgtcactataggaagaaagaaatatttcaactttcctcattctagaatatatgagacgcattgtcactatggtttatga |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3679119 |
aatatactaaatgagacgcattgtgactatagga-gaaagaaatatttcaactttcctcattctagaatatatgagacgcattgtcactatggtttatga |
3679021 |
T |
|
| Q |
114 |
atgaatcaaagttacaataatatcttaagtgtgtatttagttagttaattgtacactcaaatgtgt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3679020 |
atgaatcaaagttacaataatatcttaagtgtgtatttagttagttaattgtacactcaaatgtgt |
3678955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University