View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18738_low_2 (Length: 452)

Name: NF18738_low_2
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18738_low_2
NF18738_low_2
[»] chr1 (13 HSPs)
chr1 (1-371)||(15192450-15192813)
chr1 (95-351)||(15212644-15212895)
chr1 (283-443)||(15201848-15202006)
chr1 (347-443)||(15192814-15192910)
chr1 (274-443)||(15212739-15212908)
chr1 (275-423)||(15192635-15192786)
chr1 (201-344)||(15201848-15201986)
chr1 (19-73)||(15212560-15212614)
chr1 (193-275)||(15212819-15212901)
chr1 (268-344)||(15192813-15192890)
chr1 (353-436)||(15192635-15192717)
chr1 (193-275)||(15192820-15192903)
chr1 (231-275)||(15201955-15201999)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 15192450 - 15192813
Alignment:
Q  1 ggcaatgttcatataaagaatgtcaatggcttaagccataattaatttggatttgtaagaatcaaactcgaaactcgaaactccttggtcaatgtctgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  15192450 ggcaatgttcatataaagaatgtcaatggcttaagccataattaatttggatttgtaagaatcaaac-------tcgaaactccttggtcaatgtctgct 15192542  T
Q  101 agaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccattttgttcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192543 agaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccattttgttcta 15192642  T
Q  201 gatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192643 gatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgc 15192742  T
Q  301 aggagacgggcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacatt 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192743 aggagacgggcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacatt 15192813  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 95 - 351
Target Start/End: Original strand, 15212644 - 15212895
Alignment:
Q  95 tctgctagaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccatttt 194  Q
    ||||||| ||||||||||  ||||||| |||||| ||||||||||  |  ||||||  || ||||||||||||||||||||||||||| ||||||   ||    
T  15212644 tctgctataaatgctaattgtcattatcagcctttgtcaaactagccgacgttcat--gccaataagggaattattgctgcatatggcagtgtcccgctt 15212741  T
Q  195 gttctagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttc 294  Q
    ||||||||||||| |||||| | |||||||| ||| ||||||| || |||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  15212742 gttctagatttaatgttctctttcaggacacgggttttcattatcattaaatgctatgaaatccttgagaatat---ttcttgttctagatttaatgttc 15212838  T
Q  295 tctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattctt 351  Q
    |||||||||  || ||||||||||||||||||||||| ||||||| |||||| ||||    
T  15212839 tctcgcaggtcacaggcgttcattaccattaaatgctttgaaatccttgataatctt 15212895  T

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Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 283 - 443
Target Start/End: Original strand, 15201848 - 15202006
Alignment:
Q  283 gatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacattctctcgcagga 382  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || ||    
T  15201848 gatttaatgttctctcgcaggacacgggtgttcattaccattaaatgctatgaattctttgatattcttcttgttctagatttaacattctct--caaga 15201945  T
Q  383 caccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 443  Q
    ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15201946 cacggacatttcattaccattaaatgctttgaaatccttgaaaatctttcttctgatgatg 15202006  T

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Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 347 - 443
Target Start/End: Original strand, 15192814 - 15192910
Alignment:
Q  347 ttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192814 ttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 15192910  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 274 - 443
Target Start/End: Original strand, 15212739 - 15212908
Alignment:
Q  274 cttgttctagatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattctt-cttgttctagatttaacattc 372  Q
    ||||||||||||||||||||||||  ||||| |||||  ||||||| ||||||||||||||||||| |||| | | || ||||||||||||||||  |||    
T  15212739 cttgttctagatttaatgttctctttcaggacacgggttttcattatcattaaatgctatgaaatccttgagaatatttcttgttctagatttaatgttc 15212838  T
Q  373 tctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 443  Q
    ||||||||| ||| ||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  15212839 tctcgcaggtcacaggcgtt-cattaccattaaatgctttgaaatccttgataatctttcttctaatgatg 15212908  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 275 - 423
Target Start/End: Original strand, 15192635 - 15192786
Alignment:
Q  275 ttgttctagatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgata----ttcttcttgttctagatttaacat 370  Q
    ||||||||||||||| ||||||  |||||| || || ||||||||||| |||||||||||||||| |||| |    |||||||||||||||||||||  |    
T  15192635 ttgttctagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgt 15192734  T
Q  371 tctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttga 423  Q
    |||||||||||| || |||  ||||||||||||||||||| ||||||| ||||    
T  15192735 tctctcgcaggagacgggc-gttcattaccattaaatgctatgaaatctttga 15192786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 344
Target Start/End: Original strand, 15201848 - 15201986
Alignment:
Q  201 gatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgc 300  Q
    ||||||| ||||||  ||||||||| |||||||||||||| ||||||||||||| || |||| |    |||||||||||||||||||||  ||||||  |    
T  15201848 gatttaatgttctctcgcaggacacgggtgttcattaccattaaatgctatgaattctttgata----ttcttcttgttctagatttaacattctct--c 15201941  T
Q  301 aggagacgggc-gttcattaccattaaatgctatgaaatctttga 344  Q
    | || |||| |  ||||||||||||||||||| ||||||| ||||    
T  15201942 aagacacggacatttcattaccattaaatgctttgaaatccttga 15201986  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 15212560 - 15212614
Alignment:
Q  19 aatgtcaatggcttaagccataattaatttggatttgtaagaatcaaactcgaaa 73  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  15212560 aatgtcaatggcttaagccataattaatttggatgtggaagaaccaaactcgaaa 15212614  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 15212819 - 15212901
Alignment:
Q  193 ttgttctagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttct 275  Q
    ||||||||||||||| ||||||  ||||| ||| || ||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  15212819 ttgttctagatttaatgttctctcgcaggtcacaggcgttcattaccattaaatgctttgaaatccttgataatctttcttct 15212901  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 15192813 - 15192890
Alignment:
Q  268 tttcttcttgttctagatttaatgttctctcgcaggagacgggc-gttcattaccattaaatgctatgaaatctttga 344  Q
    ||||||||||||||||||||||  ||||||||||||| || |||  ||||||||||||||||||| ||||||| ||||    
T  15192813 tttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttga 15192890  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 436
Target Start/End: Original strand, 15192635 - 15192717
Alignment:
Q  353 ttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttct 436  Q
    |||||||||||||||| |||||  ||||||||| ||  || |||||||| |||||||| |||||||||||||||| ||||||||    
T  15192635 ttgttctagatttaacgttctcctgcaggacactggtgtt-cattaccaataaatgctatgaaatccttgagaatatttcttct 15192717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 15192820 - 15192903
Alignment:
Q  193 ttgttctagatttaacgttctcctgcaggacactggtgtt-cattaccaataaatgctatgaaatccttgagaatatttcttct 275  Q
    |||||||||||||||| |||||  ||||||||| ||  || |||||||| |||||||| |||||||||||||||| ||||||||    
T  15192820 ttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttct 15192903  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 15201955 - 15201999
Alignment:
Q  231 ttcattaccaataaatgctatgaaatccttgagaatatttcttct 275  Q
    |||||||||| |||||||| |||||||||||| ||| ||||||||    
T  15201955 ttcattaccattaaatgctttgaaatccttgaaaatctttcttct 15201999  T

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