View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18738_low_7 (Length: 334)
Name: NF18738_low_7
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 13898478 - 13898172
Alignment:
| Q |
13 |
aatatccaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagatcgaaaaaacatcgtggcctacccaattggcctattt |
112 |
Q |
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| T |
13898478 |
aatatccaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagatcgaaaaaacatcgtggcctacccaattggcctattt |
13898379 |
T |
|
| Q |
113 |
tcggaatgctgccttatttaatcaaaggactcaaaaccaacttgtatgaatggatcactgacattcttaaacatcataatggaacatgtagattcagagg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898378 |
tcggaatgctgccttatttaatcaaaggactcaaaaccaacctgtatgaatggatcactgacattcttaaacatcataatggaacatgtagattcagagg |
13898279 |
T |
|
| Q |
213 |
gccatggttcactagcctcaactatgttgtaacctcggaacctcaaaatttagaacatcttctcaaaacaaagtttagtaatttccctaaaggaaactac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898278 |
gccatggttcactagcctcaactatgttgtaacctcggaacctcaaaatttagaacatcttctcaaaacaaagtttagtaatttccctaaaggaaactac |
13898179 |
T |
|
| Q |
313 |
ttcagag |
319 |
Q |
| |
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||||||| |
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| T |
13898178 |
ttcagag |
13898172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 13886729 - 13887029
Alignment:
| Q |
16 |
atccaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagatcgaaaaaacatcgtggcctacccaattggcctattttcg |
115 |
Q |
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|||||||||| || |||||||||||| ||||||| |||||| |||||| | | || || || ||||||| ||||||| | |||||||||||| | | |
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| T |
13886729 |
atccaaatcatagaaattattattgcatccattgtcttcataatcattcatgccttgcactccaagaaacatcatggcctaacaaattggcctattcttg |
13886828 |
T |
|
| Q |
116 |
gaatgctgccttatttaatcaaaggactcaaaaccaacttgtatgaatggatcactgacattcttaaacatcataatggaacatgtagattcagagggcc |
215 |
Q |
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| T |
13886829 |
gaatgctaccttccttaatgataggactcaaaaccaacatgtatgaaggcataaccgaaacacttaaacatcaaaatggaacctttagattcaaagggcc |
13886928 |
T |
|
| Q |
216 |
atggttcactagcctcaactatgttgtaacctcggaacctcaaaatttagaacatcttctcaaaacaaagtttagtaatttccctaaaggaaactacttc |
315 |
Q |
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||||||||| || |||| | | ||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||| |
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| T |
13886929 |
atggttcacaagtttcaattgcatcataacctcagaacctcaaaatttagaacatcttctcaaaacaaagttcaatattttccctaaaggaaacttcttc |
13887028 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
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| |
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| T |
13887029 |
a |
13887029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 1035538 - 1035229
Alignment:
| Q |
13 |
aatatccaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagatcgaaaaaacatcgtgg------cctacccaattggc |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
1035538 |
aatattcaaatcactgagattattattgcagccattgttttcatattcattcgttctttaagatcgaaaaaacatcatggtcatggcctaaccaattggc |
1035439 |
T |
|
| Q |
107 |
ctattttcggaatgctgccttatttaatcaaaggactcaaaaccaacttgtatgaatggatcactgacattcttaaacatcataatggaacatgtagatt |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |
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| T |
1035438 |
ctatttttggaatgctgccttatttaatcaaaggactcaaaataaacttgtatgaatggatcactgacattcttaagcatcacaatggaacatctagatt |
1035339 |
T |
|
| Q |
207 |
cagagggccatggttcactagcctcaactatgttgtaacctcggaacctcaaaatttagaacatcttctcaaaacaaagtttagtaatttccctaaagga |
306 |
Q |
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||||||| |||||||||||||||||||||||||| ||| | ||||||| ||||||||||||| |||||||||||||||| | | || ||||||||| |
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| T |
1035338 |
cagaggggcatggttcactagcctcaactatgttataa---ctgaacctcgaaatttagaacatgttctcaaaacaaagttcactgtttatcctaaagga |
1035242 |
T |
|
| Q |
307 |
aactacttcagag |
319 |
Q |
| |
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||||| ||||||| |
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|
| T |
1035241 |
aactatttcagag |
1035229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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