View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18738_low_8 (Length: 326)
Name: NF18738_low_8
Description: NF18738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18738_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 49983629 - 49983923
Alignment:
| Q |
17 |
atgattgattgacagtggtacgaattatattcttagttttaaatgatgttcaaacttgtgtattgtacattttgttaattagttaatttttagtctatat |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49983629 |
atgattgattgacagt---acgaattatattcttagttttaaatgatgtccaaacttgtgtattgtacattttgttaattagttaatttttagtctatat |
49983725 |
T |
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| Q |
117 |
actaccaaatgggagcttttgtgcaattgttagagatgcaattgtttgagttgaaagtcggatattcatgaaa--ttagcagtatcttagaaatacaaga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49983726 |
actaccaaatgggagcttttgtgcaattgttagagatgcaattgtttgagttgaaagtcggatattcatgaaattttagcagtatcttagaaatacaaga |
49983825 |
T |
|
| Q |
215 |
ttgaatataattggcacgctaataggttgcccnnnnnnnaccatgctttgttgaattgtctgtagcatcataatgcttcacatggagtttatatggat |
312 |
Q |
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||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49983826 |
ttgaatataattggcacactaataggttgccctttttttaccatgttttgttgaattatctgtagcatcataatgcttcacatggagtttatatggat |
49983923 |
T |
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