View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18739_high_1 (Length: 453)

Name: NF18739_high_1
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18739_high_1
NF18739_high_1
[»] chr1 (34 HSPs)
chr1 (1-437)||(37473450-37473886)
chr1 (8-113)||(2295150-2295251)
chr1 (60-119)||(14385702-14385761)
chr1 (4-54)||(24915021-24915071)
chr1 (4-113)||(14576569-14576674)
chr1 (67-119)||(38247436-38247488)
chr1 (1-52)||(40977375-40977426)
chr1 (4-55)||(49938797-49938848)
chr1 (68-118)||(41505784-41505834)
chr1 (4-110)||(3233933-3234035)
chr1 (70-107)||(4549462-4549499)
chr1 (79-115)||(2295312-2295348)
chr1 (67-115)||(15477662-15477710)
chr1 (4-44)||(27976654-27976694)
chr1 (4-109)||(50644174-50644277)
chr1 (4-55)||(51929508-51929559)
chr1 (8-54)||(3887602-3887648)
chr1 (69-107)||(22416832-22416870)
chr1 (67-113)||(43230687-43230733)
chr1 (79-116)||(4076609-4076646)
chr1 (21-54)||(5741673-5741706)
chr1 (70-115)||(21002267-21002312)
chr1 (4-52)||(341497-341545)
chr1 (68-112)||(473273-473317)
chr1 (4-56)||(7927916-7927968)
chr1 (4-52)||(27970266-27970314)
chr1 (4-44)||(30286499-30286539)
chr1 (82-114)||(33186430-33186462)
chr1 (299-351)||(37466330-37466382)
chr1 (22-115)||(38001663-38001752)
chr1 (67-115)||(39976123-39976171)
chr1 (15-55)||(41505745-41505785)
chr1 (4-36)||(42575457-42575489)
chr1 (16-52)||(43990319-43990355)
[»] chr5 (32 HSPs)
chr5 (3-114)||(10640002-10640109)
chr5 (4-111)||(16937800-16937903)
chr5 (3-115)||(40438867-40438975)
chr5 (4-113)||(15246883-15246988)
chr5 (7-54)||(3520630-3520677)
chr5 (3-54)||(19460357-19460408)
chr5 (3-54)||(32859690-32859741)
chr5 (3-54)||(32861862-32861913)
chr5 (8-54)||(16457949-16457995)
chr5 (35-114)||(19460240-19460315)
chr5 (8-108)||(39105518-39105615)
chr5 (5-54)||(32862646-32862695)
chr5 (10-115)||(12433086-12433187)
chr5 (4-48)||(12857314-12857358)
chr5 (8-109)||(41419373-41419470)
chr5 (4-119)||(6521127-6521239)
chr5 (4-108)||(9107140-9107240)
chr5 (3-114)||(42500157-42500263)
chr5 (67-117)||(25461559-25461609)
chr5 (19-53)||(41535446-41535480)
chr5 (70-107)||(10771809-10771846)
chr5 (71-108)||(37954800-37954837)
chr5 (70-115)||(41820139-41820184)
chr5 (67-115)||(7705911-7705959)
chr5 (8-48)||(7853694-7853734)
chr5 (4-48)||(12857681-12857725)
chr5 (19-55)||(14932362-14932398)
chr5 (20-52)||(23160734-23160766)
chr5 (14-115)||(32372672-32372769)
chr5 (10-54)||(32942650-32942694)
chr5 (67-115)||(39594916-39594964)
chr5 (67-115)||(43300987-43301035)
[»] chr8 (22 HSPs)
chr8 (4-115)||(30251367-30251474)
chr8 (1-113)||(13958001-13958106)
chr8 (5-117)||(40981155-40981263)
chr8 (4-113)||(38648401-38648506)
chr8 (4-116)||(35643900-35644008)
chr8 (4-54)||(31716197-31716247)
chr8 (2-100)||(1058005-1058099)
chr8 (4-110)||(26771315-26771416)
chr8 (4-110)||(36963272-36963374)
chr8 (8-97)||(27028885-27028970)
chr8 (10-54)||(32840956-32841000)
chr8 (67-117)||(15180648-15180698)
chr8 (4-54)||(28763418-28763468)
chr8 (67-119)||(43717843-43717895)
chr8 (1-52)||(8146376-8146427)
chr8 (79-114)||(16162881-16162916)
chr8 (67-114)||(38602436-38602483)
chr8 (67-109)||(9130238-9130280)
chr8 (3-49)||(16825513-16825559)
chr8 (4-46)||(27694932-27694974)
chr8 (8-52)||(1930089-1930133)
chr8 (4-52)||(37945646-37945694)
[»] chr4 (33 HSPs)
chr4 (4-112)||(54426093-54426197)
chr4 (4-114)||(21731570-21731676)
chr4 (4-115)||(24169313-24169420)
chr4 (4-54)||(55064885-55064935)
chr4 (3-54)||(21523606-21523657)
chr4 (12-111)||(55437134-55437229)
chr4 (68-117)||(25571369-25571418)
chr4 (4-113)||(17822780-17822885)
chr4 (79-115)||(23319972-23320008)
chr4 (4-54)||(3069943-3069994)
chr4 (4-47)||(20109635-20109678)
chr4 (8-116)||(35571543-35571647)
chr4 (53-115)||(18815118-18815180)
chr4 (4-54)||(25904193-25904243)
chr4 (4-110)||(13126494-13126596)
chr4 (70-115)||(29126176-29126221)
chr4 (3-48)||(30668343-30668388)
chr4 (4-109)||(39603090-39603190)
chr4 (4-109)||(44862903-44863004)
chr4 (10-107)||(52315118-52315211)
chr4 (71-115)||(55414326-55414370)
chr4 (70-113)||(26780-26823)
chr4 (5-52)||(22030254-22030301)
chr4 (71-117)||(7367965-7368011)
chr4 (4-38)||(7839347-7839381)
chr4 (70-112)||(38478824-38478866)
chr4 (9-115)||(42403936-42404037)
chr4 (53-115)||(44797975-44798037)
chr4 (4-38)||(55414406-55414440)
chr4 (11-105)||(39011051-39011141)
chr4 (83-120)||(45214853-45214890)
chr4 (1-54)||(46588043-46588096)
chr4 (67-115)||(27043743-27043791)
[»] chr7 (18 HSPs)
chr7 (4-115)||(48470094-48470201)
chr7 (4-113)||(5947291-5947396)
chr7 (1-52)||(38499885-38499936)
chr7 (59-116)||(40252035-40252092)
chr7 (4-113)||(45593578-45593684)
chr7 (4-109)||(11619077-11619178)
chr7 (4-116)||(3927922-3928030)
chr7 (10-55)||(19022554-19022599)
chr7 (70-106)||(425745-425781)
chr7 (4-54)||(3308221-3308272)
chr7 (4-47)||(33601387-33601430)
chr7 (14-113)||(4970707-4970802)
chr7 (8-54)||(21568465-21568511)
chr7 (4-46)||(30570909-30570951)
chr7 (8-52)||(5947238-5947282)
chr7 (3-47)||(8960616-8960660)
chr7 (93-121)||(23989423-23989451)
chr7 (4-56)||(28614483-28614535)
[»] chr2 (35 HSPs)
chr2 (4-115)||(41812005-41812112)
chr2 (4-119)||(15305724-15305835)
chr2 (4-121)||(11863951-11864063)
chr2 (8-115)||(4606979-4607082)
chr2 (8-114)||(449901-450003)
chr2 (20-117)||(42659122-42659215)
chr2 (6-117)||(30331803-30331910)
chr2 (4-55)||(13325620-13325671)
chr2 (8-53)||(16451172-16451217)
chr2 (69-110)||(33942017-33942058)
chr2 (4-53)||(45229561-45229610)
chr2 (15-112)||(27317440-27317533)
chr2 (20-113)||(31744364-31744453)
chr2 (4-48)||(43570463-43570507)
chr2 (80-115)||(7928211-7928246)
chr2 (70-113)||(15370238-15370281)
chr2 (65-116)||(42868393-42868444)
chr2 (72-118)||(6772443-6772489)
chr2 (4-54)||(24100978-24101028)
chr2 (70-116)||(29936140-29936186)
chr2 (5-51)||(41851586-41851632)
chr2 (14-113)||(42419853-42419948)
chr2 (70-119)||(1830151-1830200)
chr2 (79-120)||(3312198-3312239)
chr2 (1-38)||(5745771-5745808)
chr2 (16-53)||(12140593-12140630)
chr2 (17-54)||(28677630-28677667)
chr2 (71-112)||(39983458-39983499)
chr2 (7-55)||(1801721-1801768)
chr2 (79-115)||(2790359-2790395)
chr2 (91-119)||(13097872-13097900)
chr2 (4-109)||(15757577-15757678)
chr2 (10-54)||(31561712-31561756)
chr2 (79-111)||(41170731-41170763)
chr2 (68-112)||(45229621-45229665)
[»] chr3 (27 HSPs)
chr3 (4-105)||(31365111-31365208)
chr3 (8-107)||(21367721-21367816)
chr3 (4-109)||(20880526-20880627)
chr3 (10-53)||(46778162-46778205)
chr3 (4-117)||(39980779-39980888)
chr3 (4-54)||(9832725-9832775)
chr3 (24-108)||(24085258-24085338)
chr3 (51-112)||(20170630-20170691)
chr3 (4-52)||(7301389-7301437)
chr3 (4-52)||(53789433-53789481)
chr3 (13-119)||(16072950-16073054)
chr3 (4-111)||(20257586-20257690)
chr3 (79-114)||(44014712-44014747)
chr3 (8-54)||(402512-402558)
chr3 (81-115)||(1820045-1820079)
chr3 (79-117)||(32663759-32663797)
chr3 (74-112)||(47132432-47132470)
chr3 (25-54)||(2128222-2128251)
chr3 (9-46)||(5436127-5436164)
chr3 (53-110)||(25447163-25447220)
chr3 (11-105)||(31365232-31365322)
chr3 (53-113)||(849799-849859)
chr3 (71-115)||(3775764-3775808)
chr3 (3-47)||(10277322-10277366)
chr3 (80-120)||(27896086-27896126)
chr3 (79-119)||(36769872-36769912)
chr3 (79-119)||(53762303-53762343)
[»] chr6 (16 HSPs)
chr6 (6-109)||(4163205-4163304)
chr6 (6-109)||(4224826-4224925)
chr6 (4-117)||(848039-848147)
chr6 (70-113)||(2457053-2457096)
chr6 (3-111)||(34430764-34430867)
chr6 (4-54)||(19411519-19411569)
chr6 (3-56)||(1215969-1216022)
chr6 (79-119)||(507318-507358)
chr6 (67-115)||(35069525-35069573)
chr6 (69-119)||(35070563-35070613)
chr6 (67-116)||(6538623-6538672)
chr6 (19-52)||(9559511-9559544)
chr6 (53-118)||(21405064-21405129)
chr6 (4-53)||(31623600-31623649)
chr6 (23-63)||(3825628-3825668)
chr6 (20-52)||(20368153-20368185)
[»] scaffold0020 (1 HSPs)
scaffold0020 (79-114)||(159887-159922)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 37473450 - 37473886
Alignment:
Q  1 tggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37473450 tggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagcca 37473549  T
Q  101 atccaaacaggccctaagttcgaacctgaatgtgtccatcctagcaatacgatcgagtagcattttttgctacacttcacaatattacaacccaaacaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37473550 atccaaacaggccctaagttcgaacctgaatgtgtccatcctagcaatacgatcgagtagcattttttgctacacttcacagtattacaacccaaacaac 37473649  T
Q  201 actgcaacatctcttgaaacaattcatcnnnnnnnnnnnnnnnnnnnnnnnntccgaaaccaacaatagggtaatcttcgggaatgggataccttctccg 300  Q
    ||| ||||||||||||||||||||||||                        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37473650 actacaacatctcttgaaacaattcatcaaataaaaagtaataaaaataaattccgaaaccaacaatagggtaatcttcgggaatgggataccttctccg 37473749  T
Q  301 gagtctcctcagccactttaagttgagtatcaaccgcatgatcgggtccgtgaccagactccgaacagnnnnnnnncctccctcccaaaatgcggttgat 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  37473750 gagtctcctcagccactttatgttgagtatcaaccgcatgatcgggtccgtgaccagactccgaacagaaaaaaaacctccctcccaaaatgcggttgat 37473849  T
Q  401 ccgactcaaccccaacggcaacgcggaggggtttaag 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  37473850 ccgactcaaccccaacggcaacgcggaggggtttaag 37473886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 2295150 - 2295251
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||     |||| | ||||||||||| |||||||| ||||||||||||||| ||||    
T  2295150 agcttatgaaaattgtcataagctgttttcataagttctcccaaacag----tctcacaaaacttatgccagtagataagctcaaataagccaattcaaa 2295245  T
Q  108 caggcc 113  Q
    ||||||    
T  2295246 caggcc 2295251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 14385761 - 14385702
Alignment:
Q  60 tctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||    
T  14385761 tctcacgaaacttatgccagtagataagctcaaataagccaatccgaacaggccccaagt 14385702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 24915071 - 24915021
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||||||||||||||||||||||||||||| || || |||||||||    
T  24915071 aaaaagcttatgaaaaatgtcataagttgttttcataaattgtcccaaaca 24915021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 14576674 - 14576569
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||| |||||| ||||||||| |||||||| ||||| |||||||||     |  | | ||| ||| ||| |||||||| ||||||||||||||||    
T  14576674 aaaaagcttttgaaaattgtcataagctgttttcacaagttgtcccaaacag----tgccacaaaatttaagccagtagataagctcaaataagccaatc 14576579  T
Q  104 caaacaggcc 113  Q
    ||||||||||    
T  14576578 caaacaggcc 14576569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 38247436 - 38247488
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||||||||||||    
T  38247436 aaacttatgccagtagataagttcaaataacccaatccaaacaggccctaagt 38247488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40977426 - 40977375
Alignment:
Q  1 tggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||||||| |||||| |||||||| ||||||||| |||||||||||||    
T  40977426 tggaaaaagcttttgaaaattgtcataaattgttttcataagttctcccaaa 40977375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 49938797 - 49938848
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaa 55  Q
    ||||||||| |||||| ||||||||| |||||||| ||||||||||||||||    
T  49938797 aaaaagcttttgaaaattgtcataagctgttttcataagttctcccaaacaa 49938848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 41505784 - 41505834
Alignment:
Q  68 aacttatgcccgtagataatctcaaataagccaatccaaacaggccctaag 118  Q
    |||||||| | |||||||| |||||||||||||||||||||| ||||||||    
T  41505784 aacttatgtcagtagataagctcaaataagccaatccaaacaagccctaag 41505834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 3234035 - 3233933
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||| |||||||||| ||| |||||||||||||| |||||||||    | |||| |||| | ||||||| | |  ||||||| |||||||||| |||||    
T  3234035 aaaaaacttatgaaaactgttataagttgttttcataagttctcc----ctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatc 3233940  T
Q  104 caaacag 110  Q
    |||||||    
T  3233939 caaacag 3233933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 4549499 - 4549462
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||||||| |||||||||||||||||||||||||||||    
T  4549499 cttatgccagtagataatctcaaataagccaatccaaa 4549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 2295312 - 2295348
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2295312 gtagataagctcaaataagccaatccaaacaggccct 2295348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 15477662 - 15477710
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||||  |||||||| ||| ||||||||||||||||||||||||    
T  15477662 aaacttatgcaagtagataagctctaataagccaatccaaacaggccct 15477710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 27976654 - 27976694
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagtt 44  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  27976654 aaaaagcttatgaaaaatgtcataagctattttcaaaagtt 27976694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 50644277 - 50644174
Alignment:
Q  4 aaaaagcttatgaaaaat--gtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaa 101  Q
    ||||||||| ||||||||  ||| ||||||||||||| |||||||||||||||     |||| | |||| ||||   |||||||| |||||||||| |||    
T  50644277 aaaaagcttgtgaaaaatttgtcgtaagttgttttcataagttctcccaaacag----tctcacaaaacatatgttagtagataagctcaaataagtcaa 50644182  T
Q  102 tccaaaca 109  Q
    ||||||||    
T  50644181 tccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 51929559 - 51929508
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaa 55  Q
    |||||||||||||||| ||||||||| ||||||||  | |||||||||||||    
T  51929559 aaaaagcttatgaaaattgtcataagctgttttcatgaattctcccaaacaa 51929508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 3887648 - 3887602
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  3887648 agcttatgaacaatgtcataagatgttttcataagttcttccaaaca 3887602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 22416870 - 22416832
Alignment:
Q  69 acttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  22416870 acttatgccagtagataagctcaaataagccaatccaaa 22416832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 43230733 - 43230687
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    ||||||||||| ||||| || |||||||| |||||||||||||||||    
T  43230733 aaacttatgccagtagagaagctcaaatatgccaatccaaacaggcc 43230687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 4076646 - 4076609
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggcccta 116  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  4076646 gtagataaactcaaataagccaatcaaaacaggcccta 4076609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 5741673 - 5741706
Alignment:
Q  21 tgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||||||| |||||||||||||||    
T  5741673 tgtcataagttgttttcataagttctcccaaaca 5741706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 21002267 - 21002312
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||||  |||||||| |||||||||||||||||||||| |||||    
T  21002267 cttatgcaagtagataagctcaaataagccaatccaaacaagccct 21002312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 341497 - 341545
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    ||||| |||||||||| |||||||||||||||||| || || |||||||    
T  341497 aaaaaacttatgaaaattgtcataagttgttttcataaattatcccaaa 341545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 473273 - 473317
Alignment:
Q  68 aacttatgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    |||||||||| |||||||  |||||||||||||||| ||||||||    
T  473273 aacttatgccagtagataggctcaaataagccaatctaaacaggc 473317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 7927916 - 7927968
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaa 56  Q
    ||||||||||||| || ||||||||||||| |||| | | |||||||||||||    
T  7927916 aaaaagcttatgacaattgtcataagttgtattcataggctctcccaaacaaa 7927968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 27970314 - 27970266
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||||||||||||||||||||   ||||| | |||||||||||||    
T  27970314 aaaaagcttatgaaaaatgtcataaaccgtttttataagttctcccaaa 27970266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 30286539 - 30286499
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagtt 44  Q
    |||||||||||||||| ||||||||| |||||||| |||||    
T  30286539 aaaaagcttatgaaaattgtcataagctgttttcataagtt 30286499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 33186430 - 33186462
Alignment:
Q  82 gataatctcaaataagccaatccaaacaggccc 114  Q
    ||||| |||||||||||||||||||||||||||    
T  33186430 gataaactcaaataagccaatccaaacaggccc 33186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 37466330 - 37466382
Alignment:
Q  299 cggagtctcctcagccactttaagttgagtatcaaccgcatgatcgggtccgt 351  Q
    |||||||||||||||| |||||  || || ||||||| |||||||||||||||    
T  37466330 cggagtctcctcagccgctttagcttcagcatcaaccacatgatcgggtccgt 37466382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 38001663 - 38001752
Alignment:
Q  22 gtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||||| |||||||| |||||||||||||||     |||| | ||||||||| | || ||||| |||||||||||  |||||| ||||||||    
T  38001663 gtcataagctgttttcataagttctcccaaacag----tctcacaaaacttatgtcagttgataaactcaaataagcttatccaagcaggccct 38001752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 39976171 - 39976123
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||| | ||||||||||||||||||| || ||||||| ||||||    
T  39976171 aaacttatgtcagtagataatctcaaataagtcagtccaaactggccct 39976123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 41505745 - 41505785
Alignment:
Q  15 gaaaaatgtcataagttgttttcaaaagttctcccaaacaa 55  Q
    ||||| ||||||||| |||||||| ||||||||||||||||    
T  41505745 gaaaattgtcataagctgttttcataagttctcccaaacaa 41505785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 42575489 - 42575457
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgtttt 36  Q
    |||||||||||||||| ||||||||||||||||    
T  42575489 aaaaagcttatgaaaactgtcataagttgtttt 42575457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 43990319 - 43990355
Alignment:
Q  16 aaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||||||||| |||||||||| |||||||||||    
T  43990319 aaaaatgtcataagctgttttcaaacgttctcccaaa 43990355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 10640002 - 10640109
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaat 102  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||    | || | ||||||||| | |||||||| ||||||||||| |||    
T  10640002 gaaaaagcttatgaaaaatgtcataagctgttttcataagttctcccaaacaa----tatcacaaaacttatgtcagtagataaactcaaataagctaat 10640097  T
Q  103 ccaaacaggccc 114  Q
    ||||||||||||    
T  10640098 ccaaacaggccc 10640109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 16937903 - 16937800
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||  ||||||||| |||||||| ||||||| |||||||     |||| | ||||||||||  |||||||| ||||||||||||||||    
T  16937903 aaaaagcttatgaaatttgtcataagctgttttcataagttcttccaaacac----tctcacaaaacttatgctagtagataagctcaaataagccaatc 16937808  T
Q  104 caaacagg 111  Q
    ||||||||    
T  16937807 caaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 40438975 - 40438867
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctct-cgaaacttatgcccgtagataatctcaaataagccaa 101  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||      ||| | | ||||||||||| |||||| | | ||||||||||||    
T  40438975 gaaaaagcttatgaaaaatgtcacaagttgttttcaaatgttctcccaaac-----gtctttacaaaacttatgccagtagatgagcccaaataagccaa 40438881  T
Q  102 tccaaacaggccct 115  Q
    |||||| |||||||    
T  40438880 tccaaagaggccct 40438867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 15246883 - 15246988
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||| ||||||||  ||||||||||||| ||||| |||||||||||||||    ||||    ||||||||| | |||||||| ||||||||| | ||||    
T  15246883 aaaaaacttatgaatgatgtcataagttgctttcataagttctcccaaaca----ttctaataaaacttatgtcagtagataagctcaaataaacaaatc 15246978  T
Q  104 caaacaggcc 113  Q
    ||||||||||    
T  15246979 caaacaggcc 15246988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 3520630 - 3520677
Alignment:
Q  7 aagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||||    
T  3520630 aagcttatgaaaaaagtcataagatgttttcataagttctcccaaaca 3520677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 19460408 - 19460357
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||| |||||    
T  19460408 gaaacagcttatgaaaaatatcataagttgtttccaaaagttctcctaaaca 19460357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 32859741 - 32859690
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||||||||||| ||||||||||||| || |||| |||||||    
T  32859741 gaaaaagcttatgaaaaatgtcgtaagttgttttcataaattcttccaaaca 32859690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 32861913 - 32861862
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||||||||||| ||||||||||||| || |||| |||||||    
T  32861913 gaaaaagcttatgaaaaatgtcgtaagttgttttcataaattcttccaaaca 32861862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 16457995 - 16457949
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||| ||||||||| |||||||| |||||||||||||||    
T  16457995 agcttatgaaaactgtcataagctgttttcataagttctcccaaaca 16457949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 19460315 - 19460240
Alignment:
Q  35 ttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggccc 114  Q
    |||||||||||||||||||||    |||| | ||||||||||| |||||||| ||||||| |||||| | ||||||||||    
T  19460315 ttcaaaagttctcccaaacaa----tctcactaaacttatgccagtagataaactcaaatgagccaacctaaacaggccc 19460240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 39105518 - 39105615
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||||||||| ||||||||||| |||||||| || ||||||||   ||| | ||||   |||||||| ||| ||||||| |||||||||| |||||||||    
T  39105518 agcttatgaacaatgtcataagctgttttcataaattctccca---aaaaagtctcataaaacttatacccctagataaactcaaataagtcaatccaaa 39105614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 32862695 - 32862646
Alignment:
Q  5 aaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||||||||| ||||||||||||| || |||| |||||||    
T  32862695 aaaagcttatgaaaaatgtcgtaagttgttttcataaattcttccaaaca 32862646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 12433187 - 12433086
Alignment:
Q  10 cttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaaca 109  Q
    |||||||  |||||| |||| | |||||| || |||||||||||||    |||| | |||| |||||| ||| ||||  |||||||||||||||||||||    
T  12433187 cttatgatcaatgtcgtaagctattttcataacttctcccaaacaa----tctcacaaaacctatgccagtaaataagttcaaataagccaatccaaaca 12433092  T
Q  110 ggccct 115  Q
    ||||||    
T  12433091 ggccct 12433086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 12857358 - 12857314
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcc 48  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||    
T  12857358 aaaaagcttgtgaaaattgtcataagttgttttcataagttctcc 12857314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 41419373 - 41419470
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||| ||||| ||||||||||| |||||||| ||||| ||||||||||    |||| | ||| ||||| | |||||| | |||||||||| |||||||||    
T  41419373 agctcatgaacaatgtcataagctgttttcacaagttatcccaaacaa----tctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaa 41419468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 6521127 - 6521239
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagtt-gttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaat 102  Q
    ||||||||| |||||| ||||||||||  ||||||| ||||||||||||||||    |||| | |||| |||| | |||| | | ||| |||||| ||||    
T  6521127 aaaaagcttgtgaaaattgtcataagtccgttttcataagttctcccaaacaa----tctcacaaaacatatgtcagtagttcagctctaataagtcaat 6521222  T
Q  103 ccaaacaggccctaagt 119  Q
    |||||||||||| ||||    
T  6521223 ccaaacaggcccaaagt 6521239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 9107140 - 9107240
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||| || |||||| |||| |||| ||||||||  ||||||||||||    ||||||| | ||||||||| |  ||||||| |||||||||| |||||    
T  9107140 aaaaagtttgtgaaaattgtcctaagctgttttcatgagttctcccaaa----cattctcacaaaacttatgtcactagataaactcaaataagtcaatc 9107235  T
Q  104 caaac 108  Q
    |||||    
T  9107236 caaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 42500263 - 42500157
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaat 102  Q
    ||||||||||||||||| |||| |||||||||| || ||||||||     |||| | |||| | ||||||||| | |||| |||   ||||||| |||||    
T  42500263 gaaaaagcttatgaaaattgtcgtaagttgtttccataagttctc-----caaagagtctcacaaaacttatgtcagtaggtaagtccaaataaaccaat 42500169  T
Q  103 ccaaacaggccc 114  Q
    ||||||||||||    
T  42500168 ccaaacaggccc 42500157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 25461609 - 25461559
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccctaa 117  Q
    ||||||||||   ||||||| ||||||||||||||||||||| ||||||||    
T  25461609 aaacttatgctgatagataagctcaaataagccaatccaaacgggccctaa 25461559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 41535446 - 41535480
Alignment:
Q  19 aatgtcataagttgttttcaaaagttctcccaaac 53  Q
    |||||||||||||||||||| ||||||||||||||    
T  41535446 aatgtcataagttgttttcataagttctcccaaac 41535480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 10771846 - 10771809
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  10771846 cttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 37954800 - 37954837
Alignment:
Q  71 ttatgcccgtagataatctcaaataagccaatccaaac 108  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  37954800 ttatgcctgtagataagctcaaataagccaatccaaac 37954837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 41820139 - 41820184
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||||| ||||| ||||||||||||||| |||||| |||||    
T  41820139 cttatgcccgtggataagctcaaataagccaattcaaacaagccct 41820184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 7705959 - 7705911
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||||  |||||||  |||||||||| |||||||||||||||||    
T  7705959 aaacttatgctagtagatatgctcaaataagtcaatccaaacaggccct 7705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 7853694 - 7853734
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcc 48  Q
    |||||||||| ||||||||||||||||| || |||||||||    
T  7853694 agcttatgaacaatgtcataagttgtttccataagttctcc 7853734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 12857725 - 12857681
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcc 48  Q
    |||||| || |||||| |||||||||||||||||| |||||||||    
T  12857725 aaaaaggttgtgaaaattgtcataagttgttttcataagttctcc 12857681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 14932362 - 14932398
Alignment:
Q  19 aatgtcataagttgttttcaaaagttctcccaaacaa 55  Q
    |||||||||||||||||| | ||||||||||||||||    
T  14932362 aatgtcataagttgttttgacaagttctcccaaacaa 14932398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 23160734 - 23160766
Alignment:
Q  20 atgtcataagttgttttcaaaagttctcccaaa 52  Q
    ||||||||||||||||||||||| |||||||||    
T  23160734 atgtcataagttgttttcaaaagatctcccaaa 23160766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 32372672 - 32372769
Alignment:
Q  14 tgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    |||||||||| || ||||||||| ||||||||| |||||||     |||| | ||||||||||| ||||||||   ||||||||||||| || ||| |||    
T  32372672 tgaaaaatgtaattagttgttttaaaaagttcttccaaacag----tctcacaaaacttatgccagtagataaggccaaataagccaatacatacaagcc 32372767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 32942650 - 32942694
Alignment:
Q  10 cttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||||||||| ||| |||| || ||||||||||||    
T  32942650 cttatgaaaaatgtcataagctgtattcataaattctcccaaaca 32942694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 39594916 - 39594964
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||| | |||||||| |||||||||| ||||||||||| |||||    
T  39594916 aaacttatgtcggtagataagctcaaataagtcaatccaaacaagccct 39594964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 43300987 - 43301035
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||||||||  || |||| |||||||||||||||||||||| |||||    
T  43300987 aaacttatgccattatataagctcaaataagccaatccaaacatgccct 43301035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 30251474 - 30251367
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||||||  ||||| |||||||  |||||||||||||||     |||| ||||||||||| | |||||||| ||||||||||||||||    
T  30251474 aaaaagcttatgaaaaatgcaataagctgttttcgtaagttctcccaaacag----tctcacgaaacttatgtcagtagataagctcaaataagccaatc 30251379  T
Q  104 caaacaggccct 115  Q
    ||||||||||||    
T  30251378 caaacaggccct 30251367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13958106 - 13958001
Alignment:
Q  1 tggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagcca 100  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||       ||| |||||||||||  ||||||| ||||| |||||||    
T  13958106 tggaaaaagcttatgaaaa-tgtcataatttgttttcaaaagttctcccaaacaa------cctcaaaacttatgccaatagataaactcaagtaagcca 13958014  T
Q  101 atccaaacaggcc 113  Q
    |||||||||||||    
T  13958013 atccaaacaggcc 13958001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 40981155 - 40981263
Alignment:
Q  5 aaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatcc 104  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  |    || | |||| ||| || |||||||| | ||||||||||||||     
T  40981155 aaaagcttatgaaaaatgtcataagttgttttcaaatgttctcccaaacagcc----tcgcaaaacatataccagtagataagcccaaataagccaatct 40981250  T
Q  105 aaacaggccctaa 117  Q
    |||| ||||||||    
T  40981251 aaacgggccctaa 40981263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 38648401 - 38648506
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||||||| || |||||| || |||||||| ||| |||||||||||     |||| | ||||||||| | ||||||||||| |||||||||||||    
T  38648401 aaaaagcttatgagaactgtcatgagctgttttcataaggtctcccaaacag----tctcacaaaacttatgtcagtagataatcttaaataagccaatc 38648496  T
Q  104 caaacaggcc 113  Q
    | ||||||||    
T  38648497 ctaacaggcc 38648506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 35644008 - 35643900
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||| ||||||||  | |||||| ||||| |||||||||     |||| | ||| ||||||| |||||||| | ||||||||||||||    
T  35644008 aaaaagcttatgaaaattgtcataaactattttcataagttatcccaaacag----tctcacaaaaattatgccagtagataagcccaaataagccaatc 35643913  T
Q  104 caaacaggcccta 116  Q
    | |||||||||||    
T  35643912 ccaacaggcccta 35643900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 31716247 - 31716197
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  31716247 aaaaagcttatgaagaatgtcataagctgttttcaaaagttctccgaaaca 31716197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 1058099 - 1058005
Alignment:
Q  2 ggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagcca 100  Q
    ||||||| || |||||||||||||||||  |||||||||||||||||||||||     |||| | |||||||||   |||||||| |||||||||||||    
T  1058099 ggaaaaaactaatgaaaaatgtcataagcagttttcaaaagttctcccaaacag----tctcacaaaacttatgtaagtagataagctcaaataagcca 1058005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 26771315 - 26771416
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||| |||| |||||| ||||||||| |||||||| |||||||||||||||     |||| | |||||||||||||||||||| |||| |||| ||| ||    
T  26771315 aaaaggcttttgaaaattgtcataagctgttttcataagttctcccaaacag----tctcacaaaacttatgcccgtagataagctcagataa-ccagtc 26771409  T
Q  104 caaacag 110  Q
    |||||||    
T  26771410 caaacag 26771416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 36963374 - 36963272
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||| |||||| ||||| ||| ||||||   |||||||||||||||     |||| | ||||||||||| |||||| | ||||||||||||||||    
T  36963374 aaaaagcttttgaaaattgtcaaaagctgtttttgtaagttctcccaaacag----tctcacaaaacttatgccagtagattagctcaaataagccaatc 36963279  T
Q  104 caaacag 110  Q
    |||||||    
T  36963278 caaacag 36963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 27028885 - 27028970
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataag 97  Q
    ||||||||||||||||| |||| |||||||| || |||||||||||||    |||| | ||||||||||| || ||||| ||||||||||    
T  27028885 agcttatgaaaaatgtcctaagctgttttcagaatttctcccaaacaa----tctcactaaacttatgccagtggataaactcaaataag 27028970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 32841000 - 32840956
Alignment:
Q  10 cttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||| |||||||||||||||||||| |||||||||||||||    
T  32841000 cttatgaacaatgtcataagttgttttcataagttctcccaaaca 32840956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 15180648 - 15180698
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccctaa 117  Q
    ||||||||| | |||||||| |||||||||||||||||||||||| |||||    
T  15180648 aaacttatggcagtagataaactcaaataagccaatccaaacaggtcctaa 15180698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 28763418 - 28763468
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||    
T  28763418 aaaaagcttatgaaaattgttataagctgttttcataagttctcccaaaca 28763468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 43717895 - 43717843
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    ||||||||| |  ||||||| |||||||||||||||||||| |||||||||||    
T  43717895 aaacttatgtcaatagataagctcaaataagccaatccaaataggccctaagt 43717843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8146376 - 8146427
Alignment:
Q  1 tggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||| |||||||||| ||||||||  |||||||| |||||||||||||    
T  8146376 tggaaaaaacttatgaaaagtgtcataaactgttttcataagttctcccaaa 8146427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 16162881 - 16162916
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccc 114  Q
    |||||||| |||||||||||||||||||||||||||    
T  16162881 gtagataaactcaaataagccaatccaaacaggccc 16162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 38602436 - 38602483
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccc 114  Q
    ||||||||| | |||||||| |||||||||| ||||||||||||||||    
T  38602436 aaacttatgtcagtagataagctcaaataagtcaatccaaacaggccc 38602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 9130280 - 9130238
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaaca 109  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||    
T  9130280 aaacttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 16825559 - 16825513
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctccc 49  Q
    ||||||||||||||||| ||||||||| | |||||| ||||||||||    
T  16825559 gaaaaagcttatgaaaattgtcataagctattttcataagttctccc 16825513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 27694932 - 27694974
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttct 46  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||    
T  27694932 aaaaagctaatgaaaattgtcataagatgttttcaaaagttct 27694974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 1930089 - 1930133
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||||| ||||||||||  |||||||| |||||||||||||    
T  1930089 agcttatgaacaatgtcataaactgttttcacaagttctcccaaa 1930133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 37945646 - 37945694
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||| ||||||| ||| ||||||||| |||||||| |||||||||||||    
T  37945646 aaaatgcttatggaaattgtcataagctgttttcagaagttctcccaaa 37945694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 54426093 - 54426197
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||| ||||||||| |||||||  |||||||||||| ||     |||| | ||||||||||| |||||||| ||||||||||||||||    
T  54426093 aaaaagcttatgaaaattgtcataagctgttttcctaagttctcccaagcag----tctcacaaaacttatgccagtagataagctcaaataagccaatc 54426188  T
Q  104 caaacaggc 112  Q
    |||||||||    
T  54426189 caaacaggc 54426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 21731676 - 21731570
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||    |||| | ||||||||| | |||||||  ||||||||| ||||||    
T  21731676 aaaaagtttatgaaaattgtgataagctgttttcataagttctcccaaacaa----tctcacaaaacttatgtcagtagatatgctcaaataaaccaatc 21731581  T
Q  104 caaacaggccc 114  Q
    |||||||||||    
T  21731580 caaacaggccc 21731570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 24169313 - 24169420
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||| |||||||||||||||||||| | |||| |||||||||| |||| |     |||| | ||||||||||| |||||||| ||| ||||||||||||    
T  24169313 aaaaatcttatgaaaaatgtcataagctatttttaaaagttctctcaaatag----tctcacaaaacttatgccagtagataaactctaataagccaatc 24169408  T
Q  104 caaacaggccct 115  Q
    |||||| |||||    
T  24169409 caaacaagccct 24169420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 55064885 - 55064935
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  55064885 aaaaagctattgaaaaatgtcataagttgttttcaaaagttctcccaaaca 55064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 21523606 - 21523657
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  21523606 gaaaaagcttatgaaaaatgtcataagttgttttcataaattcttccaaaca 21523657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 55437134 - 55437229
Alignment:
Q  12 tatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacagg 111  Q
    |||||| || ||||||||||||||||| |||||||  |||||||    | || | ||||||||| | |||||||| ||||||||||||||||||||||||    
T  55437134 tatgaacaacgtcataagttgttttcataagttctttcaaacaa----tttcacaaaacttatggcagtagataaactcaaataagccaatccaaacagg 55437229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 25571369 - 25571418
Alignment:
Q  68 aacttatgcccgtagataatctcaaataagccaatccaaacaggccctaa 117  Q
    |||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  25571369 aacttatgtcagtagataaactcaaataagccaatccaaacaggccctaa 25571418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 17822885 - 17822780
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||||||||||||| |||||||| | |||||||     ||| | |||| |  |||||||| | |||||||| ||||||||||  ||||    
T  17822885 aaaaagcttatgaaaaatgtcataagctgttttcatatgttctcc----taaatagtctcacagaacttatgtcagtagataagctcaaataagttaatc 17822790  T
Q  104 caaacaggcc 113  Q
    ||||||||||    
T  17822789 caaacaggcc 17822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 23319972 - 23320008
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||||||||||||||||||||||||||||||||||    
T  23319972 gtagataatctcaaataagccaatccaaacaggccct 23320008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 3069994 - 3069943
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttc-aaaagttctcccaaaca 54  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  3069994 aaaaagcttatgaaaaatgtcataagatgttttcaaaaagttcacccaaaca 3069943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 20109635 - 20109678
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctc 47  Q
    ||||| |||||||||||||||||||| |||||||||||||||||    
T  20109635 aaaaaacttatgaaaaatgtcataagctgttttcaaaagttctc 20109678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 35571647 - 35571543
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||| ||||| | ||| ||||| |||||| |||||||||||||||| |    || | | ||||||||||  |||||||| ||||||||||||||||||||    
T  35571647 agctcatgaacagtgtaataagctgtttttaaaagttctcccaaacta----tcccacaaaacttatgctagtagataagctcaaataagccaatccaaa 35571552  T
Q  108 caggcccta 116  Q
    ||| |||||    
T  35571551 cagacccta 35571543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 18815118 - 18815180
Alignment:
Q  53 caaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||| |||| | ||||||||||  |||| ||| ||||||||||||||||||||||||||||    
T  18815118 caaacagtctcacaaaacttatgctagtaggtaagctcaaataagccaatccaaacaggccct 18815180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 25904243 - 25904193
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||||||||||||| |||||| |||||||| ||| |||||||||||    
T  25904243 aaaaagcttatgaaaaatggcataagctgttttcataagctctcccaaaca 25904193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 13126596 - 13126494
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||||||| |||||||||||| |||||| | ||||||| |||||||     |||| | |||||||||   |||| ||| || |||||||||||||    
T  13126596 aaaaagcttatgataaatgtcataagctgtttttataagttcttccaaacag----tctcacaaaacttatgttagtaggtaagctaaaataagccaatc 13126501  T
Q  104 caaacag 110  Q
    |||||||    
T  13126500 caaacag 13126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 29126221 - 29126176
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||    
T  29126221 cttatgccggtagataagctcaaataagccaatccaaacaagccct 29126176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 30668388 - 30668343
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcc 48  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||    
T  30668388 gaaaaagcttatgaaaagtgtcataagctgttttcacaagttctcc 30668343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 39603190 - 39603090
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||||| |||| ||||||||| |||||||  |||||||||||||||     |||| | |||||||| ||  |||| || ||||||||||||||||    
T  39603190 aaaaagcttataaaaattgtcataagctgttttcctaagttctcccaaacag----tctcacaaaacttataccaataga-aagctcaaataagccaatc 39603096  T
Q  104 caaaca 109  Q
    ||||||    
T  39603095 caaaca 39603090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 44863004 - 44862903
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||||||||||  ||||||| || ||| || || |||||||||||||    |||| | |||||| |||| ||||| || |||||||| |||||||    
T  44863004 aaaaagcttatgaaaatcgtcataatttctttacacaatttctcccaaacaa----tctcacaaaacttttgccagtagacaagctcaaatatgccaatc 44862909  T
Q  104 caaaca 109  Q
    ||||||    
T  44862908 caaaca 44862903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 52315211 - 52315118
Alignment:
Q  10 cttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||||||| ||||| |||||||||||| | ||||||| ||||||||    |||| | ||||||| | | |||||||| |||||||||| |||||||||    
T  52315211 cttatgaataatgtgataagttgttttgataagttcttccaaacaa----tctcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 55414370 - 55414326
Alignment:
Q  71 ttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||||    
T  55414370 ttatgccagtagatactctcaaataagtcaatccaaacaggccct 55414326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 26823 - 26780
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    |||||||| || ||||| ||||||||||||||||||||||||||    
T  26823 cttatgccagttgataagctcaaataagccaatccaaacaggcc 26780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 22030254 - 22030301
Alignment:
Q  5 aaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||| |||||| ||||||||| |||||||| |||||||||||||    
T  22030254 aaaagcttttgaaaattgtcataagctgttttcataagttctcccaaa 22030301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 7368011 - 7367965
Alignment:
Q  71 ttatgcccgtagataatctcaaataagccaatccaaacaggccctaa 117  Q
    ||||||| |||||||| |||||||||| |||||||||||| ||||||    
T  7368011 ttatgcctgtagataaactcaaataagtcaatccaaacagaccctaa 7367965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 7839381 - 7839347
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttca 38  Q
    |||||||||||||||| ||||||||||||||||||    
T  7839381 aaaaagcttatgaaaattgtcataagttgttttca 7839347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 38478824 - 38478866
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    |||||||| |||||||  |||||||||||||||||||||||||    
T  38478824 cttatgccagtagatatgctcaaataagccaatccaaacaggc 38478866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 42404037 - 42403936
Alignment:
Q  9 gcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaac 108  Q
    ||||||||||| ||||||||| |||||||| || |||||||||| |      | | | ||||||||| | || ||||| |||||||||| ||||||||||    
T  42404037 gcttatgaaaattgtcataagctgttttcagaaattctcccaaatag-----cacacaaaacttatgtcagttgataagctcaaataagtcaatccaaac 42403943  T
Q  109 aggccct 115  Q
    |||||||    
T  42403942 aggccct 42403936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 44797975 - 44798037
Alignment:
Q  53 caaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    |||||| |||| | ||||||||| | |||||||| || |||| ||||||||||||||||||||    
T  44797975 caaacagtctcacaaaacttatgtcagtagataagcttaaatcagccaatccaaacaggccct 44798037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 55414440 - 55414406
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttca 38  Q
    |||||||||||||||||||||||||| ||||||||    
T  55414440 aaaaagcttatgaaaaatgtcataagctgttttca 55414406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 39011141 - 39011051
Alignment:
Q  11 ttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatcca 105  Q
    ||||||||  ||||||||| |||||||| | ||||||||||||      |||| ||| ||||||||||| |||||| |||||||||| |||||||    
T  39011141 ttatgaaacctgtcataagctgttttcatatgttctcccaaactg----tctcacgatacttatgcccgaagataagctcaaataagtcaatcca 39011051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 45214853 - 45214890
Alignment:
Q  83 ataatctcaaataagccaatccaaacaggccctaagtt 120  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  45214853 ataaactcaaataagccaatccaaaccggccctaagtt 45214890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46588096 - 46588043
Alignment:
Q  1 tggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||| ||||||||||| ||||||||||| |||||  ||||||| |||||||    
T  46588096 tggaaaaggcttatgaaaattgtcataagttattttcgtaagttctaccaaaca 46588043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 27043791 - 27043743
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||| | |||||||| |||||||||| |||||||||||| ||||    
T  27043791 aaacttatgtcagtagataagctcaaataagtcaatccaaacagaccct 27043743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 48470094 - 48470201
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||    ||||   ||||||||| |  ||||||| ||||||||||||||||    
T  48470094 aaaaagcttatgaaaaatgccataagctgttttcataagttctcccaaacaa----tctcataaaacttatgtctatagataagctcaaataagccaatc 48470189  T
Q  104 caaacaggccct 115  Q
    | ||||||||||    
T  48470190 ctaacaggccct 48470201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 5947291 - 5947396
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||| |||||||||||||||||| || ||||||||||||| |    |||||| ||||   |||||||| ||  ||||||| ||||||||||||||||    
T  5947291 aaaaagcatatgaaaaatgtcataagctggtttcaaaagttcttc----caaacagtctcataaaacttataccaatagataagctcaaataagccaatc 5947386  T
Q  104 caaacaggcc 113  Q
    ||||||||||    
T  5947387 caaacaggcc 5947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38499936 - 38499885
Alignment:
Q  1 tggaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  38499936 tggaaaaagcttatgaaaaatgtcataagctgttttgaaaagttctcccaaa 38499885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 40252092 - 40252035
Alignment:
Q  59 ttctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcccta 116  Q
    |||||| |||||||||||  |||||||| ||||||||||||||| |||||||||||||    
T  40252092 ttctcttgaaacttatgctagtagataagctcaaataagccaattcaaacaggcccta 40252035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 45593578 - 45593684
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgt-agataatctcaaataagccaat 102  Q
    ||||||||||||||||||||||| || |||||| | |||||||||    |||||| |||| | || |||||| | || | |||| |||||||||||||||    
T  45593578 aaaaagcttatgaaaaatgtcatcagatgtttttataagttctcc----caaacagtctcacaaagcttatgtcagtaatataaactcaaataagccaat 45593673  T
Q  103 ccaaacaggcc 113  Q
    |||||||||||    
T  45593674 ccaaacaggcc 45593684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 11619178 - 11619077
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||| |||||||||||||||||| || ||||||    ||| |  | ||  ||| |||||| | |||||||| ||||||||||||||||    
T  11619178 aaaaagcttatgaaaattgtcataagttgttttcataaattctcc----caatctgtttcatgaagcttatgtcagtagataagctcaaataagccaatc 11619083  T
Q  104 caaaca 109  Q
    ||||||    
T  11619082 caaaca 11619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 3928030 - 3927922
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||| |||||||| ||||||| |||| |||||     |||| | |||| | ||||||||||  |||||||  |||||||||||| |||    
T  3928030 aaaaagcttatgaaaattgtcataaattgttttaaaaaattctc----tcaaatagtctcacaaaacttatgctagtagatagcctcaaataagccgatc 3927935  T
Q  104 caaacaggcccta 116  Q
    |||| ||||||||    
T  3927934 caaataggcccta 3927922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 19022599 - 19022554
Alignment:
Q  10 cttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaa 55  Q
    |||||||||| |||||||||||||||||| || |||||||||||||    
T  19022599 cttatgaaaattgtcataagttgttttcataaattctcccaaacaa 19022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 425781 - 425745
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaa 106  Q
    |||||||| ||||||||||||||||||||||||||||    
T  425781 cttatgccagtagataatctcaaataagccaatccaa 425745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 3308272 - 3308221
Alignment:
Q  4 aaaaagcttatga-aaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||||||| |||||| |||||| | ||||||||||||||||||||||    
T  3308272 aaaaagcttatgagaaaatggcataagctattttcaaaagttctcccaaaca 3308221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 33601430 - 33601387
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctc 47  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||    
T  33601430 aaaaagcttatgaaaagtgtcataagctgttttcataagttctc 33601387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 4970802 - 4970707
Alignment:
Q  14 tgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    |||||| || ||||||||||||||| |||||||||||    |||| |||| | | ||||||| |   |||||| |||||||||| |||||||||||||||    
T  4970802 tgaaaattgccataagttgttttcataagttctccca----aacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaacaggcc 4970707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 21568511 - 21568465
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||| ||| ||||| |||||||| |||||||||||||||    
T  21568511 agcttatgaaaattgttataagctgttttcataagttctcccaaaca 21568465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 30570951 - 30570909
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttct 46  Q
    |||||||||||||||| ||||||||| |||||||| |||||||    
T  30570951 aaaaagcttatgaaaattgtcataagctgttttcacaagttct 30570909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 5947238 - 5947282
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    ||||||||||||||| |||||| || ||||||||||||| |||||    
T  5947238 agcttatgaaaaatgccataagctggtttcaaaagttctaccaaa 5947282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8960660 - 8960616
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctc 47  Q
    |||||||||| |||||| |||||||||||||||| | ||||||||    
T  8960660 gaaaaagcttttgaaaattgtcataagttgtttttataagttctc 8960616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 23989451 - 23989423
Alignment:
Q  93 ataagccaatccaaacaggccctaagttc 121  Q
    |||||||||||||||||||||||||||||    
T  23989451 ataagccaatccaaacaggccctaagttc 23989423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 28614483 - 28614535
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaa 56  Q
    ||||||||| |||||| ||| ||| |||||||||| |||||||||||| ||||    
T  28614483 aaaaagcttgtgaaaattgttatatgttgttttcataagttctcccaaccaaa 28614535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 41812112 - 41812005
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    ||||  ||| | |||||| || | | |||||| ||||||||||||||||    
T  41812112 aaaaagcttatgaaaaatgtcataagctgttttcaaaagttctccca----aacagcctcactaaacttttgactgcagataagctcaaataagccaatc 41812017  T
Q  104 caaacaggccct 115  Q
    |||||| |||||    
T  41812016 caaacaagccct 41812005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 15305724 - 15305835
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||| |||||||||| || ||||||||||| ||||||||||| |||||||     | || | ||||||||| |  ||||||| ||||||||||||||||    
T  15305724 aaaaaacttatgaaaattgccataagttgttgtcaaaagttctaccaaacag----tttcacaaaacttatgtcaatagataagctcaaataagccaatc 15305819  T
Q  104 caaacaggccctaagt 119  Q
    ||||||||||||||||    
T  15305820 caaacaggccctaagt 15305835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 11863951 - 11864063
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||| |||||||||||||||||||||||||||||| |||||||    |||||| |||| |  | |||| ||| ||| ||||   ||||||||||||||    
T  11863951 aaaaagtttatgaaaaatgtcataagttgttttcaaatgttctcc----caaacagtctcacagacctta-gccagtaaataagaccaaataagccaatc 11864045  T
Q  104 caaacaggccctaagttc 121  Q
    ||||||||||||||||||    
T  11864046 caaacaggccctaagttc 11864063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 4606979 - 4607082
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||| ||||| |||||||||||||||||||| |||||||||    |||| | |||| | ||||||||    |||||||| ||||||||||||||||||||    
T  4606979 agctcatgaacaatgtcataagttgttttcacaagttctcc----caaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaa 4607074  T
Q  108 caggccct 115  Q
    ||||||||    
T  4607075 caggccct 4607082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 449901 - 450003
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    ||||   ||||||||||  |||||||| ||||||||||  ||| ||||    
T  449901 agcttatgaaaaatgtcataagctgttttcaaaagtcctcccaaacaa----tctcataaaacttatgctagtagataagctcaaataagttaatgcaaa 449996  T
Q  108 caggccc 114  Q
    || ||||    
T  449997 catgccc 450003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 42659215 - 42659122
Alignment:
Q  20 atgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggccctaa 117  Q
    |||||||||| ||||||||||| ||||||||||||     |||| | ||||||||||| ||| |||| |||||||||||||| ||||||||| |||||    
T  42659215 atgtcataagctgttttcaaaacttctcccaaacag----tctcacaaaacttatgccagtaaataagctcaaataagccaacccaaacaggtcctaa 42659122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 30331803 - 30331910
Alignment:
Q  6 aaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatcca 105  Q
    ||||||| |||||| ||||||||| | |||||| |||||||||||||||     |||| | ||||||||| | |||||||| || ||||||| |||||||    
T  30331803 aaagcttgtgaaaattgtcataaggttttttcataagttctcccaaacag----tctcacaaaacttatgtcagtagataagctgaaataagtcaatcca 30331898  T
Q  106 aacaggccctaa 117  Q
    |||| |||||||    
T  30331899 aacaagccctaa 30331910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 13325620 - 13325671
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaa 55  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||| |||||    
T  13325620 aaaaagcttatgtgaaatgtcataagctgttttcaaaagttctcccgaacaa 13325671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 16451172 - 16451217
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaac 53  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||    
T  16451172 agctcatgaacaatgtcataagttgttttcataagttctcccaaac 16451217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 33942017 - 33942058
Alignment:
Q  69 acttatgcccgtagataatctcaaataagccaatccaaacag 110  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  33942017 acttatgccagtagataacctcaaataagccaatccaaacag 33942058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 45229561 - 45229610
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaac 53  Q
    |||||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  45229561 aaaaagctaatgaaaaatgtcataaggtcttttcataagttctcccaaac 45229610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 27317440 - 27317533
Alignment:
Q  15 gaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    |||||| | ||||||||||||||| |||||||| ||||||     ||||   ||||||||| | |||||||| |||||||||| ||||||||||||||    
T  27317440 gaaaaagggcataagttgttttcataagttctctcaaacag----tctcataaaacttatgtcggtagataagctcaaataagtcaatccaaacaggc 27317533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 31744364 - 31744453
Alignment:
Q  20 atgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    ||||| |||| ||||||||||||||||| ||||||     ||||   ||||||||| | |||||||| | ||||||||||||||||||||||||    
T  31744364 atgtcttaagctgttttcaaaagttctctcaaacag----tctcagaaaacttatgtcggtagataagcccaaataagccaatccaaacaggcc 31744453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 43570463 - 43570507
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcc 48  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||    
T  43570463 aaaaagcttatgaacaatgtcataagctgttttcataagttctcc 43570507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 7928246 - 7928211
Alignment:
Q  80 tagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7928246 tagataagctcaaataagccaatccaaacaggccct 7928211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 15370281 - 15370238
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    |||||||| |||||||| |||||||||| |||||||||||||||    
T  15370281 cttatgccagtagataagctcaaataagtcaatccaaacaggcc 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 42868444 - 42868393
Alignment:
Q  65 cgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcccta 116  Q
    |||||| ||||||  ||||||| |||||||||| ||||||||||||||||||    
T  42868444 cgaaacgtatgccaatagataagctcaaataaggcaatccaaacaggcccta 42868393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 6772489 - 6772443
Alignment:
Q  72 tatgcccgtagataatctcaaataagccaatccaaacaggccctaag 118  Q
    |||||| |||||||| |||||||||| ||||||||||| ||||||||    
T  6772489 tatgcctgtagataagctcaaataagtcaatccaaacatgccctaag 6772443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 24100978 - 24101028
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||||||| | ||||||||| ||||| || |||||||||||||||    
T  24100978 aaaaagcttatgaatattgtcataaggtgtttccataagttctcccaaaca 24101028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 29936140 - 29936186
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggcccta 116  Q
    |||||||| | |||| | |||||||||||||||||||||||||||||    
T  29936140 cttatgccagaagatgagctcaaataagccaatccaaacaggcccta 29936186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 41851586 - 41851632
Alignment:
Q  5 aaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaa 51  Q
    ||||||||||||||| ||||||||||||||| || || |||||||||    
T  41851586 aaaagcttatgaaaagtgtcataagttgtttccataaattctcccaa 41851632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 42419853 - 42419948
Alignment:
Q  14 tgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    |||||||||||||||| |||||||  |||||||||    |||||| ||||   ||||||||| | | |||||| |||||||||| ||||||||| |||||    
T  42419853 tgaaaaatgtcataagctgttttcgtaagttctcc----caaacagtctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaaaaggcc 42419948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 1830151 - 1830200
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    |||||| | ||| |||| |||||||||| |||||||||||||||||||||    
T  1830151 cttatgtcagtaaataaactcaaataagtcaatccaaacaggccctaagt 1830200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 3312198 - 3312239
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccctaagtt 120  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  3312198 gtagataagctcaaataagccaatccaaacaagcccttagtt 3312239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5745808 - 5745771
Alignment:
Q  1 tggaaaaagcttatgaaaaatgtcataagttgttttca 38  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  5745808 tggaaaaagcttatgaaaattgtcataagctgttttca 5745771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 12140593 - 12140630
Alignment:
Q  16 aaaaatgtcataagttgttttcaaaagttctcccaaac 53  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  12140593 aaaaatgtcataagttgttttcataagttctctcaaac 12140630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 28677667 - 28677630
Alignment:
Q  17 aaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  28677667 aaaatgtcataagctgttttcataagttctcccaaaca 28677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 39983458 - 39983499
Alignment:
Q  71 ttatgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    ||||||| |||||||| ||||||||||| |||||||||||||    
T  39983458 ttatgccggtagataacctcaaataagcaaatccaaacaggc 39983499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 1801721 - 1801768
Alignment:
Q  7 aagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaa 55  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||||||    
T  1801721 aagcttatgaaca-tgtcataagctgttttcataagttctcccaaacaa 1801768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 2790359 - 2790395
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||  |||||||||||||||||||||||||||    
T  2790359 gtagataagttcaaataagccaatccaaacaggccct 2790395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 13097900 - 13097872
Alignment:
Q  91 aaataagccaatccaaacaggccctaagt 119  Q
    |||||||||||||||||||||||||||||    
T  13097900 aaataagccaatccaaacaggccctaagt 13097872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 15757678 - 15757577
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    ||||||||| |||||| |||||||||  ||||||| || ||||||||| ||     |||| | ||||||||||| ||| |||| ||||||||| ||| ||    
T  15757678 aaaaagcttctgaaaattgtcataagcagttttcataaattctcccaagcag----tctcacaaaacttatgccagtaaataagctcaaataaaccattc 15757583  T
Q  104 caaaca 109  Q
    ||||||    
T  15757582 caaaca 15757577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 31561756 - 31561712
Alignment:
Q  10 cttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||||| |||||| | |||||||||||||| |||||||||    
T  31561756 cttatgaaaaacgtcatatgctgttttcaaaagttttcccaaaca 31561712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 41170731 - 41170763
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacagg 111  Q
    |||||||| ||||||||||||||||||||||||    
T  41170731 gtagataaactcaaataagccaatccaaacagg 41170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 45229621 - 45229665
Alignment:
Q  68 aacttatgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    |||||||||| |||||||| ||||||| | |||||||||||||||    
T  45229621 aacttatgccagtagataagctcaaatcaaccaatccaaacaggc 45229665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 31365208 - 31365111
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||| ||||||||| || ||||| |||||||||||||||     |||| | |||||||||||  ||||||| ||||||||||||||||    
T  31365208 aaaaagcttatgaaaattgtcataagctgctttcataagttctcccaaacag----tctcacaaaacttatgccaatagataagctcaaataagccaatc 31365113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 21367721 - 21367816
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaa 107  Q
    ||||| |||| ||||||||||| |||||||| |||||||||||||||     || | | ||||||||||  |||||||||||||||||||||||||||||    
T  21367721 agcttgtgaacaatgtcataagctgttttcataagttctcccaaacag----tcccacaaaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 20880526 - 20880627
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||| ||||||||| |||||||| | |||||||    |||| | |||   |||||||||||  |||||||| ||||||||||||||||    
T  20880526 aaaaagcttatgaaaattgtcataagctgttttcataggttctcc----caaatagtctaaggaaacttatgcaagtagataagctcaaataagccaatc 20880621  T
Q  104 caaaca 109  Q
    ||||||    
T  20880622 caaaca 20880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 46778205 - 46778162
Alignment:
Q  10 cttatgaaaaatgtcataagttgttttcaaaagttctcccaaac 53  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  46778205 cttatgaaaaatgtcataagttgttttcataagttctcccaaac 46778162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 39980779 - 39980888
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||||||||   |||||||| |||||||| ||||||||  |||||     |||| | ||||||||||  |||||||| |||||| |||||||||    
T  39980779 aaaaagcttatgaaaccagtcataagctgttttcataagttctcttaaacag----tctcacaaaacttatgctagtagataagctcaaacaagccaatc 39980874  T
Q  104 caaacaggccctaa 117  Q
    ||||||| ||||||    
T  39980875 caaacagaccctaa 39980888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 9832775 - 9832725
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||| |||||||||| | |||||| ||||||||||||||||||||||||    
T  9832775 aaaaagtttatgaaaaaaggcataagctgttttcaaaagttctcccaaaca 9832725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 24085338 - 24085258
Alignment:
Q  24 cataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaac 108  Q
    |||||| |||||||| ||||||||| ||||   || |||| | ||||||||||| |||||||| |||||||||||||||||||||    
T  24085338 cataagctgttttcataagttctcc-aaac---cagtctcacaaaacttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 20170691 - 20170630
Alignment:
Q  51 aacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    |||||||| |||| | ||||||||| |  ||||||| |||||||||||||||||||||||||    
T  20170691 aacaaacagtctcactaaacttatgtcactagataagctcaaataagccaatccaaacaggc 20170630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 7301389 - 7301437
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||| ||||||||||||| ||| |||||||| |||||||||||||||    
T  7301389 aaaaagtttatgaaaaatgtaatatgttgtttttaaaagttctcccaaa 7301437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 53789481 - 53789433
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| ||||    
T  53789481 aaaaagcttatgaaaagtgtcataagctgtttccaaaagttctctcaaa 53789433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 16073054 - 16072950
Alignment:
Q  13 atgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    ||||||||||||||||  |||||| | |||||||| |||| |||   | || | ||||||||| |  ||||||| |||||||||| |||||||||||||     
T  16073054 atgaaaaatgtcataaactgtttttacaagttctctcaaaaaaag--tatcacaaaacttatgtcattagataagctcaaataagtcaatccaaacaggt 16072957  T
Q  113 cctaagt 119  Q
    |||||||    
T  16072956 cctaagt 16072950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 20257586 - 20257690
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataat-ctcaaataagccaat 102  Q
    ||||| |||||||||| |||||| || || ||||| |||||||||||||||     |||| | ||| ||||| | ||||||||  |||||||||||||||    
T  20257586 aaaaaacttatgaaaattgtcattagctgctttcataagttctcccaaacag----tctcacaaaatttatggctgtagataaaactcaaataagccaat 20257681  T
Q  103 ccaaacagg 111  Q
    |||||||||    
T  20257682 ccaaacagg 20257690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 44014747 - 44014712
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccc 114  Q
    |||||||| |||||||||||||||||||||||||||    
T  44014747 gtagataaactcaaataagccaatccaaacaggccc 44014712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 402558 - 402512
Alignment:
Q  8 agcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    |||||||||| ||||||||||| |||||||| | |||||||||||||    
T  402558 agcttatgaacaatgtcataagctgttttcatacgttctcccaaaca 402512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 1820079 - 1820045
Alignment:
Q  81 agataatctcaaataagccaatccaaacaggccct 115  Q
    |||||| ||||||||||||||||||||||||||||    
T  1820079 agataagctcaaataagccaatccaaacaggccct 1820045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 32663759 - 32663797
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccctaa 117  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  32663759 gtagataagctcaaataagccaatccaaacagaccctaa 32663797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 47132432 - 47132470
Alignment:
Q  74 tgcccgtagataatctcaaataagccaatccaaacaggc 112  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  47132432 tgccagtagataagctcaaataagccaatccaaacaggc 47132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 2128251 - 2128222
Alignment:
Q  25 ataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||||||||||||||||||||||||    
T  2128251 ataagttgttttcaaaagttctcccaaaca 2128222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 5436127 - 5436164
Alignment:
Q  9 gcttatgaaaaatgtcataagttgttttcaaaagttct 46  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  5436127 gcttatgaacaatgtcataagttgttttcagaagttct 5436164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 25447220 - 25447163
Alignment:
Q  53 caaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacag 110  Q
    |||||| |||| | ||||||||| | |||||||| |||||||||| ||||||||||||    
T  25447220 caaacagtctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaacag 25447163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 31365322 - 31365232
Alignment:
Q  11 ttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatcca 105  Q
    ||||||||| ||||||||| ||| |||| |||||||||||||||     | || | ||| |||||||  ||||||| ||||||||||||||||||    
T  31365322 ttatgaaaattgtcataagctgtattcataagttctcccaaacag----tgtcacaaaaattatgccaatagataaactcaaataagccaatcca 31365232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 849799 - 849859
Alignment:
Q  53 caaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    ||||||||  |||||||||||  || ||||||||  ||||||||| |||||||||||||||    
T  849799 caaacattacctcgaaacttactccagtagataaattcaaataagtcaatccaaacaggcc 849859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 3775808 - 3775764
Alignment:
Q  71 ttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||| |||||||| |||||||||| ||||||||||| |||||    
T  3775808 ttatgccagtagataaactcaaataaggcaatccaaacacgccct 3775764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 10277366 - 10277322
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctc 47  Q
    ||||||||||||| ||||||||||||| |||||||| | ||||||    
T  10277366 gaaaaagcttatggaaaatgtcataagctgttttcatatgttctc 10277322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 27896126 - 27896086
Alignment:
Q  80 tagataatctcaaataagccaatccaaacaggccctaagtt 120  Q
    |||||||  ||||||||||||||||||||||||||| ||||    
T  27896126 tagataagttcaaataagccaatccaaacaggcccttagtt 27896086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 36769912 - 36769872
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    ||||||||  ||||||||| |||||||||||||||||||||    
T  36769912 gtagataaaatcaaataagtcaatccaaacaggccctaagt 36769872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 53762343 - 53762303
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    |||||||| ||||||||| ||||||||| ||||||||||||    
T  53762343 gtagataagctcaaataaaccaatccaagcaggccctaagt 53762303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 4163205 - 4163304
Alignment:
Q  6 aaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatcca 105  Q
    |||||| || |||| |||||||||||||||||| | ||||||    || |||| ||||   ||||||||||| |||||||| ||||||||||||||||||    
T  4163205 aaagctcataaaaattgtcataagttgttttcataggttctc----acgaacagtctcgtaaaacttatgccagtagataagctcaaataagccaatcca 4163300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 4224826 - 4224925
Alignment:
Q  6 aaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatcca 105  Q
    |||||| || |||| |||||||||||||||||| | ||||||    || |||| ||||   ||||||||||| |||||||| ||||||||||||||||||    
T  4224826 aaagctcataaaaattgtcataagttgttttcataggttctc----acgaacagtctcgtaaaacttatgccagtagataagctcaaataagccaatcca 4224921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 848039 - 848147
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaatc 103  Q
    |||||||||| |||||||||||||||  ||||| | ||||||| |||||||     |||| | ||||||||||   ||||||| |||||||||| |||||    
T  848039 aaaaagcttaagaaaaatgtcataagcagtttttataagttcttccaaacag----tctcacaaaacttatgcta-tagataagctcaaataaggcaatc 848133  T
Q  104 caaacaggccctaa 117  Q
    ||||||||||||||    
T  848134 caaacaggccctaa 848147  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 2457053 - 2457096
Alignment:
Q  70 cttatgcccgtagataatctcaaataagccaatccaaacaggcc 113  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  2457053 cttatgtcggtagataatctcaaataagccaatccaaacaggcc 2457096  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 34430764 - 34430867
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaacattctctcgaaacttatgcccgtagataatctcaaataagccaat 102  Q
    |||||||| |||||||| |||||||||||||||||| || || ||||||||||    |||  | ||||||||  | || ||||| |||||||||||||||    
T  34430764 gaaaaagcatatgaaaattgtcataagttgttttcataaattatcccaaacaa----tcttacaaaacttat-tcagttgataagctcaaataagccaat 34430858  T
Q  103 ccaaacagg 111  Q
    |||||||||    
T  34430859 ccaaacagg 34430867  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 19411569 - 19411519
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaaca 54  Q
    ||||||||||||| || ||||||||| ||||| ||||||||||||||||||    
T  19411569 aaaaagcttatgagaactgtcataagctgtttacaaaagttctcccaaaca 19411519  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 1215969 - 1216022
Alignment:
Q  3 gaaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaacaaa 56  Q
    ||||||| ||||||||||||||||||| |||||| | || ||||||||||||||    
T  1215969 gaaaaagattatgaaaaatgtcataagctgtttttataacttctcccaaacaaa 1216022  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 507318 - 507358
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  507318 gtagataagctcaaacaagccaatccaaacaggccctaagt 507358  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 35069573 - 35069525
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggccct 115  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||||||||    
T  35069573 aaacttatgtcagtagataagctcaaataagccaatacaaacaggccct 35069525  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 35070613 - 35070563
Alignment:
Q  69 acttatgcccgtagataatctcaaataagccaatccaaacaggccctaagt 119  Q
    |||| |||| |||| ||| ||||||||||||||||||||||||||| ||||    
T  35070613 acttgtgccagtaggtaagctcaaataagccaatccaaacaggcccaaagt 35070563  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 6538623 - 6538672
Alignment:
Q  67 aaacttatgcccgtagataatctcaaataagccaatccaaacaggcccta 116  Q
    |||||||||||  || |||| |||||||||| ||||||||||||||||||    
T  6538623 aaacttatgccactacataaactcaaataagacaatccaaacaggcccta 6538672  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 9559544 - 9559511
Alignment:
Q  19 aatgtcataagttgttttcaaaagttctcccaaa 52  Q
    |||||||||||||||||||| |||||||||||||    
T  9559544 aatgtcataagttgttttcataagttctcccaaa 9559511  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 21405129 - 21405064
Alignment:
Q  53 caaacattctctcgaaacttatgcccgtagataatctcaaataagccaatccaaacaggccctaag 118  Q
    |||| |||||| | ||||||||| | ||| |||| |||||||||| |||||||||||| |||||||    
T  21405129 caaatattctcacaaaacttatgtcagtatataagctcaaataagtcaatccaaacagaccctaag 21405064  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 31623600 - 31623649
Alignment:
Q  4 aaaaagcttatgaaaaatgtcataagttgttttcaaaagttctcccaaac 53  Q
    ||||||||| |||||| ||||||||| | |||||| ||||||||||||||    
T  31623600 aaaaagcttgtgaaaattgtcataagctattttcagaagttctcccaaac 31623649  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 3825628 - 3825668
Alignment:
Q  23 tcataagttgttttcaaaagttctcccaaacaaacattctc 63  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  3825628 tcataagttgtttccataagttctcccaaacaaacaatctc 3825668  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 20368185 - 20368153
Alignment:
Q  20 atgtcataagttgttttcaaaagttctcccaaa 52  Q
    ||||||||||||||||||| |||||||||||||    
T  20368185 atgtcataagttgttttcataagttctcccaaa 20368153  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 159922 - 159887
Alignment:
Q  79 gtagataatctcaaataagccaatccaaacaggccc 114  Q
    |||||||| |||||||||||||||||||||||||||    
T  159922 gtagataagctcaaataagccaatccaaacaggccc 159887  T

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