View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18739_high_3 (Length: 344)
Name: NF18739_high_3
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18739_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 9493620 - 9493293
Alignment:
| Q |
1 |
ggatgttacattaagatttgaaaggagttttggaagacatccatttgggtatgttacatgaattgtttgagacttgtaatcaattttgttgacaataaaa |
100 |
Q |
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| T |
9493620 |
ggatgttacattaagatttgaaaggagttttggaagacatccatttgggtatgttacatgaattgtttgagacttgtaatcaattttgttgacaataaaa |
9493521 |
T |
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| Q |
101 |
ttgattgaatttggcaattttagtatggtttgttgattctcattgcatgaaagatcatacccaattttgccacaattttgtggttgaatgttttggagtc |
200 |
Q |
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| T |
9493520 |
ttgattgaatttggcaattttagtatggtttgttgattctcatagcatgaaagatcatacccaattttgccacaattttgtggttgaatgttttggagtc |
9493421 |
T |
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| Q |
201 |
taaaagggtattgaatagttggagcatctttgtgattacaccttgatttcatgcattgaacatcatttgaagcaaggttagtgtagtaatttacactaaa |
300 |
Q |
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| T |
9493420 |
taaaagggtattgaatagttggagcatctttgtgattacaccttgttttcatgcattgaacatcatttgaagcaaggttagtgtagtaatttacactaaa |
9493321 |
T |
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| Q |
301 |
aaagaagcataagaattgaagaactaat |
328 |
Q |
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| T |
9493320 |
aaagaagcataagaattgaagaactaat |
9493293 |
T |
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