View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18739_low_10 (Length: 288)
Name: NF18739_low_10
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18739_low_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 52645873 - 52645598
Alignment:
| Q |
17 |
ttacataaaaaggaatggaattaaaatggaagcagcagcatgcattgtacccaaagttccactcagcgcatacataaggtccaatgcgaagattggcata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52645873 |
ttacataaaaaggaatggaattaaaatggaagcagcagcatgcattgtacccaaagttccactcagcgcatacataaggtccaatgcgaagattggcata |
52645774 |
T |
|
| Q |
117 |
aagccccgctttttgcactgtcttaataaaccttactaaatcatatcttccttcaaaattgtactgcaatgcaacccataatcagaaagaaaaataaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52645773 |
aagccccgctttttgcactgtcttaataaaccttactaaatcatatcttccttcaaaattgtactgcaatgcaacccataatcagaaagaaaaataaaac |
52645674 |
T |
|
| Q |
217 |
ataa-aaaacaaa---nnnnnnnnnnncaaagggcttcatgaaaattacattgccaggagatggttcatgaacatc |
288 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52645673 |
ataaaaaaacaaattttttttttttttcaaagggcttcatgaaaattacattgctaggagatggttcatgaacatc |
52645598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 7344715 - 7344594
Alignment:
| Q |
64 |
tacccaaagttccactcagcgcatacataaggtccaatgcgaagattggcataaagccccgctttttgcactgtcttaataaaccttactaaatcatatc |
163 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | ||||| ||||||| ||| ||| |||||||||||||| ||| ||||| ||| || | |
|
|
| T |
7344715 |
tacccaaagttccactcagcacaaacataaggtccaattctaagatgtacataaagaccctttttctgcactgtcttaatgaactgtactagatcgtacc |
7344616 |
T |
|
| Q |
164 |
ttccttcaaaattgtactgcaa |
185 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7344615 |
ttccttcaaaattgtactgcaa |
7344594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 8142160 - 8142281
Alignment:
| Q |
63 |
gtacccaaagttccactcagcgcatacataaggtccaatgcgaagattggcataaagccccgctttttgcactgtcttaataaaccttactaaatcatat |
162 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||||||||| | | || ||||| || || ||||| || ||||||| ||||||||| || | |||| | |
|
|
| T |
8142160 |
gtacccaaaattccattcagcacaaacataaggtccaattcttaaatgagcatatagtcctgctttatgtactgtctgaataaacctcacaaggtcattt |
8142259 |
T |
|
| Q |
163 |
cttccttcaaaattgtactgca |
184 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
8142260 |
cttccctcaaaattgtactgca |
8142281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 31635355 - 31635244
Alignment:
| Q |
67 |
ccaaagttccactcagcgcatacataaggtccaatgcgaagattggcataaagccccgctttttgcactgtcttaataaaccttactaaatcatatcttc |
166 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| | ||||| ||||||| ||| ||| ||||||| ||| || || | ||||| | | || |||| |
|
|
| T |
31635355 |
ccaaagttccactcagcacaaacataaggtccaattctaagatgtacataaagaccccttttctgcactgcctt-atgaaacgtactataccgtaccttc |
31635257 |
T |
|
| Q |
167 |
cttcaaaattgta |
179 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31635256 |
cttcaaaattgta |
31635244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University