View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18739_low_12 (Length: 239)
Name: NF18739_low_12
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18739_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 52645612 - 52645391
Alignment:
| Q |
1 |
tggttcatgaacatcccagaagacataagtgtctataacatcaagaccaccatgtttggctttcctaattagatcttcccacatctaaaaatcacacatt |
100 |
Q |
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| T |
52645612 |
tggttcatgaacatcccagaagacataagtgtctataacatcaagaccaccatgtttggctttcctaattagatcttcccacatctaaaaatcacacatt |
52645513 |
T |
|
| Q |
101 |
tgaaacaaattacaaacaagagcgtgaactactatagaagcttgaaaattgaaatgcaattgcaaacatacttcaggggtgcttctaggatagtgaatgg |
200 |
Q |
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| T |
52645512 |
tgaaaaaaattacaaacaagaacgtgaactactatagaagcttgaaaattgaaatgcaattgcaaacatacttcaggggtgcttctaggatagtgaatgg |
52645413 |
T |
|
| Q |
201 |
aaccagaaattaggattcttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
52645412 |
aaccagaaattaggattcttct |
52645391 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 7344291 - 7344240
Alignment:
| Q |
168 |
atacttcaggggtgcttctaggatagtgaatggaaccagaaattaggattct |
219 |
Q |
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| T |
7344291 |
atacttcaggggtgcttcttggataatgaatggaaccagagatgaggattct |
7344240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 8142607 - 8142661
Alignment:
| Q |
165 |
aacatacttcaggggtgcttctaggatagtgaatggaaccagaaattaggattct |
219 |
Q |
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||||||| || ||||||||||||||||| || ||||||||||||| |||||||| |
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| T |
8142607 |
aacatacatctggggtgcttctaggataatgtatggaaccagaaaaaaggattct |
8142661 |
T |
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