View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18739_low_14 (Length: 213)
Name: NF18739_low_14
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18739_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 1738829 - 1738650
Alignment:
| Q |
16 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggc |
115 |
Q |
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| T |
1738829 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgcc |
1738730 |
T |
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| Q |
116 |
aatgttagttggtctatatatttcatgaaacactcattcattgatatatatatacacacacactacttatgcataataatta |
197 |
Q |
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| T |
1738729 |
aatgttagttggtctatatatttcatgaaacactcattcattgatata--tatacacacacactacttatgcataataatta |
1738650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 1717332 - 1717232
Alignment:
| Q |
16 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggc |
115 |
Q |
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|||||||||||| |||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| | |
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| T |
1717332 |
aaaatattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--taccaaatccttgcc |
1717235 |
T |
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| Q |
116 |
aat |
118 |
Q |
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||| |
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| T |
1717234 |
aat |
1717232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 1748684 - 1748591
Alignment:
| Q |
16 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatcct |
111 |
Q |
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||||||| ||||||||||||||||| ||||| |||||| |||| | ||||| |||||||||||| |||| |||||||| ||||||||||| |
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| T |
1748684 |
aaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaa--aaccaaatcct |
1748591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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