View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18739_low_3 (Length: 385)
Name: NF18739_low_3
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18739_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 42113564 - 42113332
Alignment:
| Q |
20 |
caatgatgcaccagaagaagatgaaaagtacgaggaggaaacgtacggtccaaagagagttaaagccttgaagataggttaaagattttgatttcaaacg |
119 |
Q |
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| T |
42113564 |
caatgatgcaccagaagaagatgaaaagtacgaggaggaaacgtacggtccaaagagagttaaagccttgaagataggttaaagattttgatttcaaacg |
42113465 |
T |
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| Q |
120 |
gagatggaaaataaaacaaagagataaaacagagaggactattaaggaggagattaatgttacggtggtgaggtcgaaagctgaagtaaggattggtgat |
219 |
Q |
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| T |
42113464 |
gagatggaaaataaaacaaagagataaaacagagaggacaattaaggaagagattaatgttacggtggtgaggtcgaaagctgaagtaaggattggtgat |
42113365 |
T |
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| Q |
220 |
acagtattcatgaacaacatcgatcaataacaa |
252 |
Q |
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| T |
42113364 |
aaagtattcatgaacaacatcgatcaataacaa |
42113332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 42113306 - 42113246
Alignment:
| Q |
287 |
gtagtatctacataaatcattgataattaagattaccccacaaaaagatgttggatggtgg |
347 |
Q |
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| T |
42113306 |
gtagtatctacataaatcattgataattaagattaccacacaaaaagatgttggatggtgg |
42113246 |
T |
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