View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18739_low_6 (Length: 317)
Name: NF18739_low_6
Description: NF18739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18739_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 45939072 - 45938785
Alignment:
| Q |
18 |
acttggtgactccaactgtttcaaccaaagaaacttcaacgggtagaggagaaggaacaactagaatggtcattggattatctgccatcccttgacctac |
117 |
Q |
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| T |
45939072 |
acttggtgactccaactgtttcaaccaaagaaacttcaacgggtagaggagaaggaacaactagaatgttcattggattatctgccatcccttgacctac |
45938973 |
T |
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| Q |
118 |
caaaggctgatccaaaaccacttgaattccatgttccttaagatggttagcaggaccaataccacttagcatcaacaattgtggacttccaattgcacca |
217 |
Q |
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| T |
45938972 |
caaaggctgatccaaaaccacttgaattccatgttccttaagatggttagcaggaccaatgccacttggcatcaacaattgtggacttccaatagcacca |
45938873 |
T |
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| Q |
218 |
gctgatactattatttcattcttcactttggagcttatgtgttgctctatgtatgattcccaatgtatctttgaatatcactccatat |
305 |
Q |
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| T |
45938872 |
gctgatactattatttcattcttcactttggagcttatgtgttgctctttgtatgattcccaatgtatctttgaatatcactccatat |
45938785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 45945898 - 45945612
Alignment:
| Q |
17 |
aacttggtgactccaactgtttcaaccaaagaaacttcaacgggtagaggagaaggaacaactagaatggtcattggattatctgccatcccttgaccta |
116 |
Q |
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| T |
45945898 |
aacttagtgattcccacagtttcaatcacagaaagttctactggtaaaggagaaggaacaacaagaacattttttggactatctgccatcccttgaccaa |
45945799 |
T |
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| Q |
117 |
ccaaaggctgatccaaaaccacttgaattccatgttccttaagatggttagcaggaccaataccacttagcatcaacaattgtggacttccaattgcacc |
216 |
Q |
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| T |
45945798 |
caaaaggctgatccataaccacctggattccaagcgccttaagatggttagcaggaccaatgccactcagcatcagtaactgtggacttccaattgcacc |
45945699 |
T |
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| Q |
217 |
agctgatactattatttcattcttcactttggagcttatgtgttgctctatgtatgattcccaatgtatctttgaatatcactccata |
304 |
Q |
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| T |
45945698 |
agctgatacaattatttcattatccactttggagattatgt-atgctctatgtatgattcctaatgtatctttgaaaatcactccata |
45945612 |
T |
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